fix: update dependencies and fix build

.github/workflows/release.yml

@@ -13,4 +13,4 @@ jobs:
       npm: true
     secrets:
       github-token: ${{ secrets.BOT_TOKEN }}
-      npm-token: ${{ secrets.NPM_BOT_TOKEN }}
+      npm-token: ${{ secrets.NPM_BOT_TOKEN }}

.github/workflows/typedoc.yml

@@ -1,32 +1,15 @@
-name: Deploy TypeDoc on GitHub pages
+name: TypeDoc
 
 on:
   workflow_dispatch:
   release:
     types: [published]
 
-env:
-  NODE_VERSION: 20.x
-  ENTRY_FILE: 'src/index.ts'
-
 jobs:
-  deploy:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-node@v4
-        with:
-          node-version: ${{ env.NODE_VERSION }}
-      - name: Install dependencies
-        run: npm install
-      - name: Build documentation
-        uses: zakodium/typedoc-action@v2
-        with:
-          entry: ${{ env.ENTRY_FILE }}
-      - name: Deploy to GitHub pages
-        uses: JamesIves/github-pages-deploy-action@releases/v4
-        with:
-          token: ${{ secrets.BOT_TOKEN }}
-          branch: gh-pages
-          folder: docs
-          clean: true
+  typedoc:
+    # Documentation: https://github.com/zakodium/workflows#typedoc
+    uses: zakodium/workflows/.github/workflows/typedoc.yml@typedoc-v1
+    with:
+      entry: 'src/index.ts'
+    secrets:
+      github-token: ${{ secrets.BOT_TOKEN }}

.prettierignore

@@ -0,0 +1 @@
+CHANGELOG.md

.prettierrc.json

@@ -0,0 +1,7 @@
+{
+  "arrowParens": "always",
+  "semi": true,
+  "singleQuote": true,
+  "tabWidth": 2,
+  "trailingComma": "all"
+}

package.json

@@ -1,32 +1,47 @@
 {
   "name": "linear-sum-assignment",
   "version": "1.0.8",
+  "license": "MIT",
   "description": "it performs a linear sum assignment even if the cost matrix is rectangular.",
-  "main": "./lib/index.js",
-  "module": "./lib-esm/index.js",
-  "types": "./lib/index.d.ts",
   "keywords": [],
   "author": "J Alejandro Bolanos A <jobo322>",
-  "license": "MIT",
+  "type": "module",
+  "exports": {
+    ".": "./lib/index.js"
+  },
   "files": [
-    "src",
     "lib",
-    "lib-esm"
+    "src"
   ],
   "scripts": {
-    "clean": "rimraf lib lib-esm",
     "check-types": "tsc --noEmit",
-    "eslint": "eslint src --ext ts --cache",
-    "eslint-fix": "npm run eslint -- --fix",
+    "clean": "rimraf coverage dist lib",
+    "eslint": "eslint . --cache",
+    "eslint-fix": "eslint . --cache --fix",
     "prepack": "npm run tsc",
-    "prettier": "prettier --check src",
-    "prettier-write": "prettier --write src",
-    "test": "npm run test-coverage && npm run eslint",
-    "test-coverage": "npm run test-only -- --coverage",
-    "test-only": "jest",
-    "tsc": "npm run clean && npm run tsc-cjs && npm run tsc-esm",
-    "tsc-cjs": "tsc --project tsconfig.cjs.json",
-    "tsc-esm": "tsc --project tsconfig.esm.json"
+    "prettier": "prettier --check .",
+    "prettier-write": "prettier --write .",
+    "test": "npm run test-only && npm run check-types && npm run eslint && npm run prettier",
+    "test-only": "vitest run --coverage",
+    "tsc": "npm run clean && npm run tsc-build",
+    "tsc-build": "tsc --project tsconfig.build.json"
+  },
+  "dependencies": {
+    "cheminfo-types": "^1.8.1",
+    "ml-matrix": "^6.12.1",
+    "ml-spectra-processing": "^14.18.0"
+  },
+  "devDependencies": {
+    "@types/node": "^24.9.1",
+    "@vitest/coverage-v8": "^3.2.4",
+    "@zakodium/tsconfig": "^1.0.2",
+    "eslint": "^8.57.0",
+    "eslint-config-cheminfo-typescript": "^12.2.0",
+    "jest-matcher-deep-close-to": "^3.0.2",
+    "prettier": "^3.6.2",
+    "rimraf": "^6.0.1",
+    "typescript": "^5.9.3",
+    "vitest": "^3.2.4"
   },
   "repository": {
     "type": "git",
@@ -35,32 +50,5 @@
   "bugs": {
     "url": "https://github.com/mljs/linear-sum-assignment/issues"
   },
-  "homepage": "https://github.com/mljs/linear-sum-assignment#readme",
-  "jest": {
-    "preset": "ts-jest",
-    "testEnvironment": "node"
-  },
-  "prettier": {
-    "arrowParens": "always",
-    "semi": true,
-    "singleQuote": true,
-    "tabWidth": 2,
-    "trailingComma": "all"
-  },
-  "dependencies": {
-    "cheminfo-types": "^1.7.3",
-    "ml-matrix": "^6.11.0",
-    "ml-spectra-processing": "^14.2.2"
-  },
-  "devDependencies": {
-    "@types/jest": "^29.5.12",
-    "eslint": "^8.57.0",
-    "eslint-config-cheminfo-typescript": "^12.2.0",
-    "jest": "^29.7.0",
-    "jest-matcher-deep-close-to": "^3.0.2",
-    "prettier": "^3.2.5",
-    "rimraf": "^5.0.5",
-    "ts-jest": "^29.1.2",
-    "typescript": "^5.4.2"
-  }
+  "homepage": "https://github.com/mljs/linear-sum-assignment#readme"
 }

src/__tests__/index.test.ts

@@ -1,8 +1,6 @@
-import { toMatchCloseTo } from 'jest-matcher-deep-close-to';
+import { describe, expect, it } from 'vitest';
 
-import { linearSumAssignment } from '..';
-
-expect.extend({ toMatchCloseTo });
+import { linearSumAssignment } from '../index.ts';
 
 describe('linear sum problem', () => {
   it('same number of rows and columns', () => {

src/getShortestPath.ts

@@ -1,8 +1,8 @@
-import { DoubleArray } from 'cheminfo-types';
+import type { DoubleArray } from 'cheminfo-types';
 import type { Matrix } from 'ml-matrix';
 import { xSequentialFillFromTo } from 'ml-spectra-processing';
 
-interface GetShortestPathOptions {
+export interface GetShortestPathOptions {
   currUnAssCol: number;
   dualVariableForColumns: DoubleArray;
   dualVariableForRows: DoubleArray;

src/index.ts

@@ -1,9 +1,9 @@
-import { DoubleArray } from 'cheminfo-types';
+import type { DoubleArray } from 'cheminfo-types';
 import { Matrix } from 'ml-matrix';
 
-import { getShortestPath } from './getShortestPath';
+import { getShortestPath } from './getShortestPath.ts';
 
-interface Options {
+export interface LinearSumAssignmentOptions {
   /**
    * if true it will generate the assignment by the maximization of the cost.
    * @default true
@@ -21,7 +21,7 @@ export function linearSumAssignment(
    * Cost matrix
    */
   input: DoubleArray[] | Matrix,
-  options: Options = {},
+  options: LinearSumAssignmentOptions = {},
 ) {
   const { maximaze = true } = options;
 

tsconfig.build.json

@@ -0,0 +1,5 @@
+{
+  "extends": "./tsconfig.json",
+  "include": ["src"],
+  "exclude": ["**/__tests__", "**/*.test.*"]
+}

tsconfig.json

@@ -1,10 +1,9 @@
 {
+  "extends": "@zakodium/tsconfig",
   "compilerOptions": {
-    "esModuleInterop": true,
-    "moduleResolution": "node",
-    "inlineSourceMap": true,
-    "strict": true,
-    "target": "es2019"
+    "noUncheckedIndexedAccess": false,
+    "outDir": "lib",
+    "types": ["node"]
   },
-  "include": ["./src/**/*"]
+  "include": ["src", "vite*.ts"]
 }

vitest.config.ts

@@ -0,0 +1,10 @@
+import { defineConfig } from 'vitest/config';
+
+export default defineConfig({
+  test: {
+    coverage: {
+      include: ['src/**'],
+    },
+    setupFiles: ['vitest.setup.ts'],
+  },
+});

vitest.setup.ts

@@ -0,0 +1,4 @@
+import { toBeDeepCloseTo, toMatchCloseTo } from 'jest-matcher-deep-close-to';
+import { expect } from 'vitest';
+
+expect.extend({ toMatchCloseTo, toBeDeepCloseTo });