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Wrong inputs in inputs.yaml from API #5

@RubenChM

Description

@RubenChM

The input files in https://inria.mddbr.eu/api/rest/current/projects/A00L6.1/inputs do not separate the directory in this project, maybe because of the spaces or the slash in the name:

mds:
    -
        name: 'replica 1/3, 100 ns'
        refframe: 0
        metadata:
            TEMP: 300
        directory: 'replica_1/3, 100 ns'
        input_structure_filepath: 'replica_1/3, 100 ns/structure.pdb'
        input_trajectory_filepaths: 'replica_1/3, 100 ns/trajectory.xtc'

This causes an error on the workflow when using the flag -proj to download it:

(mwf_env) rchaves@OROZCO85:~/Downloads/sophie$ mwf run -proj inr-A00L6 -smp -i tmscore -url https://mdposit-dev.mddbr.eu/api/

Running MDDB workflow (v0.1.6-68-gb0c5bb0a) for project at sophie
Downloading inputs file (inputs.yaml)

  3 MDs are to be run

 Processing MD at replica_13_100_ns
InputError: Missing input structure file "replica_1/3, 100 ns/structure.pdb"
``

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