phyloframe

Dataframe-based tools for working with phylogenetic trees.

• Free software: MIT license
• Documentation: https://phyloframe.readthedocs.io
• Repository: https://github.com/mmore500/phyloframe

Install

python3 -m pip install phyloframe

A containerized release of phyloframe is available via ghcr.io

singularity exec docker://ghcr.io/mmore500/phyloframe:v0.2.2 python3 -m phyloframe --help

Usage

from phyloframe import legacy as pfl

df = pfl.alifestd_make_empty()
print(df)

Citing

If phyloframe contributes to a scholarly work, please cite it as

Matthew Andres Moreno. (2026). mmore500/phyloframe. Zenodo. https://doi.org/10.5281/zenodo.18842674

@software{moreno2026phyloframe,
  author = {Matthew Andres Moreno},
  title = {mmore500/phyloframe},
  month = mar,
  year = 2026,
  publisher = {Zenodo},
  doi = {10.5281/zenodo.18842674},
  url = {https://doi.org/10.5281/zenodo.18842674}
}

And don't forget to leave a star on GitHub!