Hi,
I'm working from scRNA-seq data (not ATAC-seq) and would like to get a rough idea of possible GRNs in other species - it doesn't have to be perfect, just enough to run the program and perhaps better than running on the human one using orthologs.
I was wondering how the promoted-based GRN files from the celloracle.data.load() functions are made,
The genomes in question are Cavia porcellus (Celloracle says it supports this, but it looks like only for ATAC) and Monodelphis domestica, and a new genome
Is this something that could be done on request for a new species, or a notebook shared on the gimmemotifs methodology?
Hi,
I'm working from scRNA-seq data (not ATAC-seq) and would like to get a rough idea of possible GRNs in other species - it doesn't have to be perfect, just enough to run the program and perhaps better than running on the human one using orthologs.
I was wondering how the promoted-based GRN files from the celloracle.data.load() functions are made,
The genomes in question are Cavia porcellus (Celloracle says it supports this, but it looks like only for ATAC) and Monodelphis domestica, and a new genome
Is this something that could be done on request for a new species, or a notebook shared on the gimmemotifs methodology?