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HybPiper version 2.3.1

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@chrisjackson-pellicle chrisjackson-pellicle released this 31 Oct 01:58
· 5 commits to master since this release
v2.3.1
31a9235
  • Re-write of the modules for commands hybpiper stats, hybpiper retrieve_sequences, and hybpiper paralog_retriever, to vastly speed up processing of compressed sample (*.tar.gz) folders.
    • Much improved speed using a single thread (the hard-coded default for HybPiper version 2.3.0)
    • Samples can now be processed in parallel when using these commands; new option --cpu added (default is to use all available CPUs minus one).
  • Bugfix: ensure all intron sequences are recovered when running hybpiper retrieve_sequences using the intron option.
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