Trajectory Generation
It is a good idea to test the syntax and behaviour of a population model before using it in a MCMC run. The TrajectoryOut class saves a full trajectory to a csv file:
<run spec='TrajectoryOut' model='@twodeme' file="trajSIR3.csv"> </run>SIR3 contains the input xml files and generated trajectory output corresponding to a similar three-deme running example. The trajectory plotted after running the SIR3example.xml file is:
