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bugfix/aggregate_from_path#873

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gongyixiao merged 2 commits intodevelopfrom
bugfix/aggregate_from_path
Feb 6, 2021
Merged

bugfix/aggregate_from_path#873
gongyixiao merged 2 commits intodevelopfrom
bugfix/aggregate_from_path

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Fixing #847

No need to specify any of --QC --somatic --germline when --aggregate [tsv] no --mapping/--pairing/--bamMapping, with or without --watch

@gongyixiao gongyixiao added the bug Something isn't working label Feb 4, 2021
@gongyixiao gongyixiao added this to the 1.4 milestone Feb 4, 2021
@gongyixiao gongyixiao requested a review from anoronh4 February 4, 2021 16:07
@gongyixiao gongyixiao self-assigned this Feb 4, 2021
@gongyixiao gongyixiao changed the title bugfix aggregate from path when not watching tsv bugfix/aggregate_from_path Feb 4, 2021
@gongyixiao gongyixiao merged commit cc52d26 into develop Feb 6, 2021
@gongyixiao gongyixiao deleted the bugfix/aggregate_from_path branch February 6, 2021 08:08
@gongyixiao gongyixiao mentioned this pull request Aug 12, 2021
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several aggregate processes not running with --aggregate aggregate.tsv when pairing file absent

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