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Dev branch 3.0.13 release#27

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msrosenberg merged 22 commits intomainfrom
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Jun 28, 2023
Merged

Dev branch 3.0.13 release#27
msrosenberg merged 22 commits intomainfrom
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Fixed column/row header import bug
Fixed figures not refreshing bug
Added color name space option
Added DOIs to refs
Fixed typos

Column headers were shifted incorrectly if both the first row and first column of input were being used as headers.
Fixed bug where figures were not necessarily being visually replaced when a new figure was created even though the actual background figure was changed.

This bug was introduced by previous fix where old figures were being remembered when one went to save a figure to a file.
A slightly better way to deal with the clearing of old figures prior to creating new ones
Phylogeny figure needs to be kept independent of normal graphical output as its displayed in a separate tab
Instead of passing both figures and the chart_data back and forth among functions, just pass the chart_data as it can be used to reconstruct the figure to display at the end.

Reduces overall complexity a bit across the codebase
fixing test code to align with refactored figure creation
A bit of code cleaning, mostly comments but also one missed return value, based on the figure refactoring
Fixed typos in two references in help files
All references with a DOI now include those in the full reference output
@msrosenberg msrosenberg merged commit 79d82e7 into main Jun 28, 2023
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