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geoffjentry
commented
Dec 27, 2025
| typedef size_t array[2][reference_length]; | ||
| array &LCS_line = *(reinterpret_cast<array*>(new size_t[2 * reference_length])); | ||
| array &LCS_line_rc = *(reinterpret_cast<array*>(new size_t[2 * reference_length])); | ||
| array &LCS_line = *(reinterpret_cast<array*>(new size_t[2 * reference_length]())); |
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I don't believe these are necessary but noticed it when trying to track down the actual error
geoffjentry
commented
Jan 2, 2026
| sample_start += i; | ||
| i = 0; | ||
| while (sample_end - i - 1 > sample_start && sample[sample_end - i - 1] == MASK) | ||
| while (i + 1 < sample_end - sample_start && sample[sample_end - i - 1] == MASK) |
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It also occurs to me that just above this diff is another example of the same bug with reference_end. Seems a lot less likely to trigger (perhaps 0%?), but I'll try to remember to push an update w/ that patched as well
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Resolves #1