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Hi
We have downloaded SRA file from https://sra-download.ncbi.nlm.nih.gov/traces/era14/ERR/ERR1019/ERR1019069.
We are using prebuilt fastq-dump (v2.9.0) sratoolkit.2.9.0-centos_linux64/bin/fastq-dump.2.9.0.
The command to get FastQ files from the SRA file was as follows:
fastq-dump -v 1 --split-3 -F -X 3 -Z ERR1019069.sra
RESULT:
@1
GGTTGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGGTTAGGGTTAGGGTTAGGGTTAGGGTT
+1
@@BDFFFBFFHFDEHHIGIFHFGIJCDCGHGBHHIHI?DFFHIFGFCHH=CHIIG.=AHHH;?D?C>6;;?CBBBB(5?#####################
@1
CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTA
+1
CCCFFFFFHHHHHJJIIJIJJJGGGIHIJJJIGGIIJIFJJJJIJJJIFHGCGHJIEGGIHHGC@@BEDEEECDBD(=BD<<CB?A?<38A+293(88<<
@2
CCTAACCCTAACCCCTAACCCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCAACCCCTACCCCCTACCTCTAACCATAACCCTAACCCTAAC
+2
CCCFFFFFHHHHGJIGEGIGHH=H;EFDH7?BBFFC;3BDGHE3BGCCHHGII2@CHEH#########################################
@2
TAGGGTTGGGTTAGGGTTAGGGTTAGGGTTGGGTTAGGGTTAGGGTTAGGGGTAGGGTTGGGTTAGGGGTAGGGTTAGGGTTAGGGTTGGGGGTAGGGTT
+2
@@@FFDDFHHHHHGEIEECHHH9EBFHI*8@FI6B=FCC=;CEGC)8(6@C#################################################
@3
GTTAGGGTTAGGGTTAGGGTTGGGTTAGGGTTGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTGTT
+3
@@@DFFFDFFDHHEGGHJJ@FHHI?F=FIJ@FHIE;;?BDGBC@GFH.=@@EEAHFBFF@CBACD;;?ACB(9<<<A>ABA?89???C?+8<A?A#####
@3
CTAACCCTAACCCTAACCCTAACCCTAACCCTACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTACCCAAACCCCTAACCCCAAC
+3
CCCFFFFFHHHHHJJJJJJJIIIJIIJJJJICHIJJECHHIJ<FFGGH;CFHEG9FGGI9(=7AE?67)>@2655?########################
I have also used --defline-seq '$ac $si $sn $sg $ri $rn'
with no avail in retrieving standard Illumina headers.
Could you please let us know how to get original headers like the following?
@HWUSI-EAS100R:6:73:941:1973#0/1
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