Summer 2018 Research Project
Orginization
Folders:
1). R-contains all function definitions
1a). myRfunctions.R-population model, partial derivative functions, optimizations functions, error messages, hypergeometric function, likelihood functions, monte carlo integral functions
2). Data-contains all data
2a). A&X_data.R
2b). Plots-plots for the log seterminants of A, computed through simulations and analytically
2c). log Determinants of A-files containing logdeterminants of A with varying mu,sigma,d
2d). monte_carlo_optimization- this folder has the optimized parameters for P(X|A) with no correlation and soon with correlation
3). Analysis-contains code for analysis
3a). AnalysisLikelihood.R-Analysis of likelihood equation
3b). Data Analysis.R-Analysis of "data"
3c). AnalysisPredictedParams.R-Analysis of predicted parameters
3d). Computing log DetA.R-Simulating log DetA
3e). test.R-script for testing blcoks of code, currently contains code to optimize P(X|A) for symmetric A and X with no correlation
4). Monte Carlo Integral
4a). test_code.Rmd-r markdown file with description of the entire proccess gone through to perform numerical optimization of likelihood
4b). plot_code.Rmd-r markdown file with plots of estimated vs actual parameter values