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matthdsm
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Mar 6, 2026
* add mqc_sav module * fix bclconvert config * add demux logging * typo * fix rg function * fix rg function * catch library from sampleinfo if applicable * fix bclconvert meta.id * add cgroup metrics plugin * Remove nf-cgroup-metrics plugin from config * update multiqcsav and multiqc * mv rg function to lib * add mqcsav and fix plumbing * changelog * fix syntax error * Replace lib with function in subwf to please linter * update test config, fix issues * ditch conda from CI and update docs a little * fix file staging * fix linting * tinkering with configs * fix nf-test profiles * more work * linting * mqc_sav attempt #1 * Refactor MultiQC summary file handling and improve metadata management * fix test samplesheet * bump mqc_cmgg container * fix mqc output path * update modules + patch * fix multi-lane processing * fix SAV titleé * fix outputs and patch module * fix snap config process selector * set version to 3.0.0 * final fixed for multilane run qc (hopefully) * fix mqc inputs * move bclconvert rg function to subwf * fix final tests * let's hope we're done now... * fix main wf errors * fix tests (again) * test error * f*ck it * f*ck it
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).