Some visualisation functions developed for Hi-C data
usage: HiC-integrationmap.py [-h] [--int INT] [--bin BIN] [--region REGION] [--chromhmm CHROMHMM] [--out OUT]
generating heatmap with arc plot on top to visualise regional Hi-C interaction with integration with chromHMM states.
optional arguments: -h, --help show this help message and exit
--int INT significant interaction file with first three columns as bin1 bin2 and interaction count, the file must conatin a header.
--bin BIN bed file for bin indexes
--region REGION chr:start-end
--chromhmm CHROMHMM path to the chromhmm file for integration
--out OUT name of the sample to plot
https://github.com/ningbioinfostruggling/HiCvisualisation/blob/main/HiC-integrationmap.pdf
For more information about integration-tracks plot, please see https://github.com/ningbioinfostruggling/3DFAACTS-SNP.