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20 changes: 1 addition & 19 deletions Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ clean-build: ## remove build artifacts
rm -fr dist/
rm -fr .eggs/
find . -name '*.egg-info' -exec rm -fr {} +
find . -name '*.egg' -exec rm -f {} +
find . -name '*.egg' -exec rm -rf {} +

clean-pyc: ## remove Python file artifacts
find . -name '*.pyc' -exec rm -f {} +
Expand Down Expand Up @@ -99,21 +99,3 @@ activate: ## activate a virtual environment. Run `make venv` before activating.
@echo "To activate the new virtualenv, execute the following from your shell"
@echo "source $(PWD)/venv/bin/activate"

git-init: ## initializes a git repository. Commits and pushes to github.
@echo "====================================================================="
@echo "Make sure you've created a github repo 'mhalagan-nmdp/pyars'"
@read -p "Continue? [Y/N] " choice; \
case "$$choice" in \
y | Y ) \
echo "====================================================================="; \
git init . ; \
git add . ; \
git commit -m "Initial Import" ; \
git remote add origin https://github.com/mhalagan-nmdp/pyars ; \
git push -u origin master; \
echo "====================================================================="; \
echo "Git Initialized!" \
;; \
* ) echo "Git NOT initialized!" ;; \
esac;

37 changes: 6 additions & 31 deletions setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -32,24 +32,7 @@
history = history_file.read()

requirements = [
'certifi==2018.1.18',
'chardet==3.0.4',
'idna==2.6',
'mypy==0.560',
'numpy',
'pandas',
'pkginfo==1.4.1',
'psutil==5.4.3',
'python-dateutil==2.6.1',
'pytz==2018.3',
'requests==2.20.0',
'requests-toolbelt==0.8.0',
'six==1.11.0',
'tqdm==4.19.5',
'typed-ast==1.1.0',
'typing==3.6.4',
'urllib3==1.24.2',
'xlrd==1.1.0'
'pandas==0.25.1'
]


Expand All @@ -58,13 +41,13 @@
]

setup(
name='pyard',
version='0.0.10',
name='py-ard',
version='0.0.11',
description="ARD reduction for HLA with python",
long_description=readme + '\n\n' + history,
author="Michael Halagan",
author_email='mhalagan@nmdp.org',
url='https://github.com/nmdp-bioinformatics/pyARD',
author="CIBMTR",
author_email='cibmtr-pypi@nmdp.org',
url='https://github.com/nmdp-bioinformatics/py-ard',
packages=[
'pyard',
],
Expand All @@ -79,14 +62,6 @@
'Intended Audience :: Developers',
'License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)',
'Natural Language :: English',
"Programming Language :: Python :: 2",
'Programming Language :: Python :: 2.6',
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.3',
'Programming Language :: Python :: 3.4',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
],
test_suite='tests',
Expand Down