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Remove pandas library dependency #358

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Merged
merged 12 commits into from
Oct 21, 2025
Merged

Remove pandas library dependency #358

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737ea60
Remove Pandas dependency
pbashyal-nmdp Oct 2, 2025
faca054
Remove Pandas dependency
pbashyal-nmdp Oct 2, 2025
6afd070
Merge remote-tracking branch 'origin/no-pandas' into no-pandas
pbashyal-nmdp Oct 2, 2025
d6ae458
Merge remote-tracking branch 'origin/no-pandas' into no-pandas
pbashyal-nmdp Oct 2, 2025
210d4a6
Merge remote-tracking branch 'origin/no-pandas' into no-pandas
pbashyal-nmdp Oct 2, 2025
4942a5b
close connection on `__dec__`
pbashyal-nmdp Oct 3, 2025
ca2fc81
Simple Table
pbashyal-nmdp Oct 6, 2025
2077d2f
switch to pytest
pbashyal-nmdp Oct 6, 2025
1f77874
Sort valid alleles so that are saved in alphabetical order in db
pbashyal-nmdp Oct 6, 2025
4ecd8c7
close:
pbashyal-nmdp Oct 6, 2025
3e74166
Update python-tests action for unit test path
pbashyal-nmdp Oct 17, 2025
a855c1f
Bump version: 1.5.5 → 2.0.0b1
pbashyal-nmdp Oct 17, 2025
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4 changes: 2 additions & 2 deletions .github/workflows/python-tests.yml
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Expand Up @@ -41,6 +41,6 @@ jobs:
- name: Run Unit Tests
run: |
# When run the first time, it'll build the library
python -m unittest tests.test_pyard tests.test_smart_sort
python -m unittest tests.unit.test_pyard tests.unit.test_smart_sort
# When run the second time, it should use the already installed library
python -m unittest tests.test_pyard tests.test_smart_sort
python -m unittest tests.unit.test_pyard tests.unit.test_smart_sort
2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -4,7 +4,7 @@ LABEL MAINTAINER="Pradeep Bashyal"

WORKDIR /app

ARG PY_ARD_VERSION=1.5.5
ARG PY_ARD_VERSION=2.0.0b1

COPY requirements.txt /app
RUN pip install --no-cache-dir --upgrade pip && \
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2 changes: 1 addition & 1 deletion api-spec.yaml
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Expand Up @@ -2,7 +2,7 @@ openapi: 3.0.3
info:
title: ARD Reduction
description: Reduce to ARD Level
version: "1.5.5"
version: "2.0.0b1"
servers:
- url: 'http://localhost:8080'
tags:
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2 changes: 1 addition & 1 deletion pyard/__init__.py
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Expand Up @@ -26,7 +26,7 @@
from .misc import get_imgt_db_versions as db_versions

__author__ = """NMDP Bioinformatics"""
__version__ = "1.5.5"
__version__ = "2.0.0b1"


def init(
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