Dev env bootstrap fails on both Python 3.13 and 3.12 (build isolation + pinned deps)

[Ofekirsh]

Running make venv && make install currently fails on:

Python 3.13 - Cython/Tempita import of removed stdlib cgi while building py-graph-imputation.

Python 3.12 - a separate failure caused by pinned deps that force building an incompatible NumPy from sdist inside an isolated build env, leading to a setuptools/pkg_resources error.
So using 3.12 is not a reliable workaround in the current state.

Environment:

i)macOS (Apple Silicon)
ii)Python 3.13.x and Python 3.12.2 tested
iii)Fresh clone of py-graph-match

Steps to Reproduce:
׳׳׳
git clone https://github.com/nmdp-bioinformatics/py-graph-match
cd py-graph-match
make venv
source venv/bin/activate
make install
׳׳׳

Failure on Python 3.13 (example excerpt)
While building py-graph-imputation:
׳׳׳
ModuleNotFoundError: No module named 'cgi'
...
File ".../Cython/Tempita/_tempita.py", line 36, in
import cgi
׳׳׳

Expected Behavior
make venv && make install should succeed on at least one clearly documented, supported Python version; contributors should then be able to run make lint && make test.

[pbashyal-nmdp]

It currently fails trying to pip install with py-graph-imputation because that requires Python 3.11.

Switching to Python 3.11 and then running:

make venv
make install
make dist

worked for me. The make install failed at the setup.py install, I'm not sure why. Running make dist again fixes it.

I also upgraded py-graph-imputation and py-ard to the latest. #6

If you're on MacOS, you can use brew to install 3.11

 brew install python@3.11

and then run python3.11 -m venv venv instead of make venv

Let me know if this works for you.