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378 bug nan in reportsso for sexratio in hermaphroditism model with second growth morph #381

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Merged
Rick-Methot-NOAA merged 2 commits into from
Dec 1, 2022
Merged

378 bug nan in reportsso for sexratio in hermaphroditism model with second growth morph #381

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87a3783
Create StockSynthesis.code-workspace
Rick-Methot-NOAA Dec 1, 2022
ebdc45e
revise sex_ratio report to be area-specific
Rick-Methot-NOAA Dec 1, 2022
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15 changes: 11 additions & 4 deletions SS_write_report.tpl
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Original file line number Diff line number Diff line change
Expand Up @@ -3574,7 +3574,10 @@ FUNCTION void write_bigoutput()
SS2out << " Herma_Trans ";
}
if (gender == 2)
SS2out << " sex_ratio ";
{
for (p = 1; p <=pop; p++)
SS2out << " sex_ratio_area:_" << p ;
}
for (f = 1; f <= Nfleet; f++)
SS2out << " Len:_" << f << " SelWt:_" << f << " RetWt:_" << f;
SS2out << endl;
Expand Down Expand Up @@ -3627,16 +3630,20 @@ FUNCTION void write_bigoutput()
SS2out << " NA ";
}
}
// write sex ratio in endyr using natage in area 1
// write sex ratio in endyr for each area using natage
// small constant added to denominator so that morph-area combos with no fish will display a value of 0.0, rather than "nan"
// because natage is used, the reported sex ratio values will be responsive to hermaphroditism, and to sex-specific mortality
if (gender == 2)
{
if (sx(g) == 1)
{
SS2out << " " << natage(t, 1, g, a) / (natage(t, 1, g, a) + natage(t, 1, g + gmorph / 2, a)) << " ";
for (p = 1; p <= pop; p++)
SS2out << " " << natage(t, p, g, a) / (natage(t, p, g, a) + natage(t, p, g + gmorph / 2, a) + 1.0e-07) << " ";
}
else
{
SS2out << " " << natage(t, 1, g, a) / (natage(t, 1, g, a) + natage(t, 1, g - gmorph / 2, a)) << " ";
for (p = 1; p <= pop; p++)
SS2out << " " << natage(t, p, g, a) / (natage(t, p, g, a) + natage(t, p, g - gmorph / 2, a) + 1.0e-07) << " ";
}
}
if (WTage_rd == 0)
Expand Down
12 changes: 12 additions & 0 deletions StockSynthesis.code-workspace
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Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
{
"folders": [
{
"path": ".."
}
],
"settings": {
"files.associations": {
"\"*.extension\":": "\"tpl\""
}
}
}