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Casanovo v3.3.0

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@bittremieux bittremieux released this 04 Apr 16:40
· 160 commits to main since this release
v3.3.0
d023fa9
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3.3.0 - 2023-04-04

Added

  • Included the min_peptide_len parameter in the configuration file to restrict predictions to peptide with a minimum length.
  • Export multiple PSMs per spectrum using the top_match parameter in the configuration file.

Changed

  • Calculate the amino acid scores as the average of the amino acid scores and the peptide score.
  • Spectra from mzML and mzXML peak files are referred to by their scan numbers in the mzTab output instead of their indexes.

Fixed

  • Verify that the final predicted amino acid is the stop token.
  • Spectra are correctly matched to their input peak file when analyzing multiple files simultaneously.
  • The score of the stop token is taken into account when calculating the predicted peptide score.
  • Peptides with incorrect N-terminal modifications (multiple or internal positions) are no longer predicted.
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