Biohack2018

Feature selection

Process Conservation

Process conservation with profile

    python conservation.py conservation.bw BAND.bed OUTPUT.csv

Process BED

Process bedfile intersection with profile

    python intersect.py SORTED_FILE_STAIN SORTED_FILE_REGIONS BINS OUTPUT_CSV

Visualize Visualize single file

    python visualize.py plot foo.png file.csv

Visualize logfc

    python visualize.py logfc foo.png file1.csv file2.csv

Visualize heatmap

    python visualize.py heatmap foo.png file1.csv file2.csv file3.csv ...

Neural networks

Prepare data and launch NN.

    python prepare_ml.py
    python nn.py