- kmeans graph clustering for bacterial metagenomics.
- define the clusters as a CSV file with the node and edge relations.
- added a method to estimate the features from the node graph.
- inlater versions will add a node2vec or deep walk.
- you can define the weights as the distance between the nodes as a additional column.
- Given any node graph data from previous defined study with the expression dataset, it can fit the unsupervised methods as well as weighted classification to enable the classification of the new node data based on the expression data.
cargo build
kmeans clustering of bacterial network data.
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Gaurav Sablok,
Email: codeprog@icloud.com
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Usage: graphbact <COMMAND>
Commands:
bact-graph bactgraph
help Print this message or the help of the given subcommand(s)
Options:
-h, --help Print help
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Gaurav Sablok
codeprog@icloud.com