v0.11.0

Added

• Adds support for testing experimental API
• Adds functionality to SampleCollection objects to generate tabular data for FunctionalRuns using the .to_df() method
• Adds include_taxa_missing_rank parameter to to_df() method for including taxa that do not have a designated parent at rank (will be grouped into a "No " column) (metrics readcount_w_children and abundance_w_children are supported)
• Adds support for readcount_w_children metric to plot_bargraph() when passing include_taxa_missing_rank (only abundance_w_children was supported previously)
• Adds increased customization of plot legend; plot_bargraph()'s legend parameter now accepts an altair.Legend instance
• Adds group_by support to plot_bargraph
• Adds support for linking to NCBI taxonomy browser from plots

Changed

• Pins selenium to <4.3.0
• Pins scipy<1.9
• Default plot legend is bigger (displaying up to 40 items)

Fixed

• Fixes metadata fetching to support fields that match neither metadata nor taxa instead of raising an error
• Fixes box plot display bug for samples with same value
• Fixes pandas SettingWithCopyWarning previously raised by to_df and plot_bargraph
• Fixes plot_bargraph display bug for empty samples (total count or abundance of zero)
• Fixes None artifact in PDFs