Segmentation fault using openmpi 4.1.2 #11129
Description
Background information
What version of Open MPI are you using? (e.g., v1.10.3, v2.1.0, git branch name and hash, etc.)
4.1.2
Describe how Open MPI was installed (e.g., from a source/distribution tarball, from a git clone, from an operating system distribution package, etc.)
Following these steps:
Downloaded OpenMPI 4.1.2 from https://www.open-mpi.org/software/ompi/v4.1/
cd openmpi-4.1.2
./configure --prefix=/home/software/huyxii/openmpi-4.1.2
make
make install
Please describe the system on which you are running
Operating system/version: CentOS Linux release 7.4.1708 (Core)
Details of the problem
mpirun could run successfully when running hello_c in the example directory:
mpirun -np 5 hello_c
Hello, world, I am 3 of 5, (Open MPI v4.1.2, package: Open MPI huyxii@mu01 Distribution, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021, 106)
Hello, world, I am 0 of 5, (Open MPI v4.1.2, package: Open MPI huyxii@mu01 Distribution, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021, 106)
Hello, world, I am 1 of 5, (Open MPI v4.1.2, package: Open MPI huyxii@mu01 Distribution, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021, 106)
Hello, world, I am 2 of 5, (Open MPI v4.1.2, package: Open MPI huyxii@mu01 Distribution, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021, 106)
Hello, world, I am 4 of 5, (Open MPI v4.1.2, package: Open MPI huyxii@mu01 Distribution, ident: 4.1.2, repo rev: v4.1.2, Nov 24, 2021, 106)
When using mpiexec on some programs, I just get error like this:
mpiexec -np 5 maker -base Fn_Male maker_bopts.ctl maker_exe.ctl maker_opts.ctl --ignore_nfs_tmp
STATUS: Parsing control files...
STATUS: Processing and indexing input FASTA files...
[mu01:30587] *** Process received signal ***
[mu01:30587] Signal: 段错误 (11)
[mu01:30587] Signal code: Address not mapped (1)
[mu01:30587] Failing at address: 0x4b0
[mu01:30587] [ 0] /lib64/libpthread.so.0(+0xf6d0)[0x2b89f23636d0]
[mu01:30587] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x2b89f12f3042]
[mu01:30587] [ 2] /lib64/libpthread.so.0(+0xf6d0)[0x2b89f23636d0]
[mu01:30587] [ 3] /lib64/libc.so.6(__poll+0x2d)[0x2b89f2663f0d]
[mu01:30587] [ 4] /home/huyxii/software/openmpi-4.1.2/lib/libopen-pal.so.40(+0x8a3a8)[0x2b89fce5d3a8]
[mu01:30587] [ 5] /home/huyxii/software/openmpi-4.1.2/lib/libopen-pal.so.40(opal_libevent2022_event_base_loop+0x196)[0x2b89fce53e76]
[mu01:30587] [ 6] /home/huyxii/software/openmpi-4.1.2/lib/libopen-pal.so.40(+0x3cfbe)[0x2b89fce0ffbe]
[mu01:30587] [ 7] /lib64/libpthread.so.0(+0x7e25)[0x2b89f235be25]
[mu01:30587] [ 8] /lib64/libc.so.6(clone+0x6d)[0x2b89f266ebad]
[mu01:30587] *** End of error message ***
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
[mu01:30592] *** Process received signal ***
[mu01:30592] Signal: 段错误 (11)
[mu01:30592] Signal code: Address not mapped (1)
[mu01:30592] Failing at address: 0x4b0
[mu01:30592] [ 0] /lib64/libpthread.so.0(+0xf6d0)[0x2b9c0e3996d0]
[mu01:30592] [ 1] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x22)[0x2b9c0d329042]
[mu01:30592] [ 2] /lib64/libpthread.so.0(+0xf6d0)[0x2b9c0e3996d0]
[mu01:30592] [ 3] /usr/lib64/perl5/CORE/libperl.so(Perl_csighandler+0x0)[0x2b9c0d329020]
[mu01:30592] [ 4] /lib64/libpthread.so.0(+0xf6d0)[0x2b9c0e3996d0]
[mu01:30592] [ 5] /lib64/libc.so.6(__poll+0x2d)[0x2b9c0e699f0d]
[mu01:30592] [ 6] /home/huyxii/software/openmpi-4.1.2/lib/libopen-pal.so.40(+0x8a3a8)[0x2b9c18e933a8]
[mu01:30592] [ 7] /home/huyxii/software/openmpi-4.1.2/lib/libopen-pal.so.40(opal_libevent2022_event_base_loop+0x196)[0x2b9c18e89e76]
[mu01:30592] [ 8] /home/huyxii/software/openmpi-4.1.2/lib/libopen-pal.so.40(+0x3cfbe)[0x2b9c18e45fbe]
[mu01:30592] [ 9] /lib64/libpthread.so.0(+0x7e25)[0x2b9c0e391e25]
[mu01:30592] [10] /lib64/libc.so.6(clone+0x6d)[0x2b9c0e6a4bad]
[mu01:30592] *** End of error message ***
SIGTERM received
SIGTERM received
SIGTERM received
mpiexec noticed that process rank 1 with PID 0 on node mu01 exited on signal 11 (Segmentation fault).
Thanks in advance for any help.