Build RATP with meson

.github/workflows/conda-package-build.yml

@@ -2,16 +2,34 @@ name: build_publish_anaconda
 
 on:
   push:
-    branches: 
-      - '**'
-    tags:
-      - 'v*'
+    branches:
+      - meson_baugetfa
   pull_request:
-    branches: 
+    branches:
       - '**'
 
 jobs:
-  build:
-    uses: openalea/github-action-conda-build/.github/workflows/conda-package-build.yml@main
-    secrets: 
-      anaconda_token: ${{ secrets.ANACONDA_TOKEN }}
+  build-and-publish:
+    name: ${{ matrix.os }}, Python 3.${{ matrix.python-minor-version }} for conda deployment
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      max-parallel: 6
+      matrix:
+        os: [ ubuntu-latest , macos-13 , windows-latest]
+        python-minor-version: [10, 11, 12]
+
+
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v3
+    - name: Build and Publish
+      uses: openalea/action-build-publish-anaconda@main
+      with:
+        conda: conda
+        python: ${{ matrix.python-minor-version }}
+        channels: openalea3, conda-forge
+        token: ${{ secrets.ANACONDA_TOKEN }}
+        publish: 'false'
+        label: main
+        build-options: ""

.readthedocs.yml

@@ -0,0 +1,13 @@
+version: 2
+
+build:
+  os: "ubuntu-22.04"
+  tools:
+    python: "mambaforge-22.9"
+
+conda:
+  environment: conda/environment.yml
+
+sphinx:
+  # Path to your Sphinx configuration file.
+  configuration: doc/conf.py

conda/environment.yml

@@ -0,0 +1,16 @@
+name: ratp_dev
+channels:
+  - openalea3
+  - conda-forge
+dependencies:
+  - python
+  - pip
+  - pandoc
+# list here manually conda-only deps (listed in [tool.conda.environment] section of pyproject)
+  - openalea.plantgl
+  - openalea.mtg
+  - pandas
+  - numpy
+# let pip install the rest using pyproject.toml (if you are okay with conda/pip mix)
+  - pip:
+      - -e ..[doc,test]

conda/meta.yaml

@@ -1,49 +1,72 @@
+{% set pyproject = load_file_data('../pyproject.toml', from_recipe_dir=True) %}
+{% set name = pyproject.get('project').get('name') %}
+{% set description = pyproject.get('project').get('description') %}
+{% set license = pyproject.get('project').get('license') %}
+{% set home = pyproject.get('project', {}).get('urls', {}).get('Homepage', '') %}
+{% set build_deps = pyproject.get("build-system", {}).get("requires", []) %}
+{% set deps = pyproject.get('project', {}).get('dependencies', []) %}
+{% set conda_deps = pyproject.get('tool', {}).get('conda', {}).get('environment', {}).get('dependencies',[]) %}
 {% set native = 'm2w64-' if win else '' %}
 
 package:
-  name: alinea.pyratp
-  version: 2.0.1
+  name: {{ name }}
+  version: 1.0.0
 
 source:
-    path: ..
+  path: ..
+
+build:
+  number: 0
+  preserve_egg_dir: True
+  script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-build-isolation -vv
 
 requirements:
-    host:
-        - python x.x
-        - setuptools
-        - numpy >=1.25  # [osx]
-        - numpy x.x  # [not osx]
-    build:
-        - python {{PY_VER}}
-        - numpy x.x  # [not osx]
-        - numpy >=1.25  # [osx]
-        - meson # Maybe deprecated for current version
-        - make
-        - {{ compiler('fortran') }}  # [not win]
-        - {{ compiler('c') }} 
-        #- compilers
-        - {{ native }}toolchain   # [win]
-        - charset-normalizer
-    run:
-        - python x.x
-        - path.py
-        - {{ native }}toolchain   # [win]
-        - {{ pin_compatible('numpy') }}
-        - scipy
-        - pandas
-        - meson # Maybe deprecated for current version
-        - charset-normalizer
+  host:
+    - python
+    {% for dep in build_deps %}
+    - {{ dep }}
+    {% endfor  %}
+  build:
+    - python
+    {% for dep in build_deps %}
+    - {{ dep }}
+    {% endfor  %}
+    - {{ compiler('fortran') }}  # [not win]
+    - m2w64-gcc-fortran           # [win]
+#    - {{ compiler('c') }}
+    #- compilers
+    - {{ native }}toolchain   # [win]
+    - charset-normalizer
+  run:
+    - python
+    {% for dep in deps + conda_deps %}
+    - {{ dep }}
+    {% endfor %}
+    - {{ native }}toolchain   # [win]
+#    - {{ pin_compatible('numpy') }}
+    - charset-normalizer
 
-        #- openalea.mtg
-        #- openalea.visualea
 test:
-    imports:
-        - alinea.pyratp
-        - alinea.pyratp.pyratp
+  requires:
+    - pytest
+    {% for dep in deps + conda_deps %}
+    - {{ dep }}
+    {% endfor %}
+  imports:
+    - {{ name }}
+  source_files:
+    - test/test_*.py
+    - test/data/**
+  commands:
+   - cd test
+   - pytest -v --ignore=test_complet.py
+
 about:
-    home: http://github.com/openalea-incubator/PyRATP
-    license: Cecill-C
-    summary: RATP is a model to compute Radiation Absorption, Transpiration and Photosynthesis.
+  home: {{ home }}
+  license: {{ license }}
+  summary: {{ description }}
+
 extra:
-    recipe-maintainers:
-        - pradal
+  recipe-maintainers:
+    - pradal
+    - baugetfa

example/ratp/test.py

@@ -2,7 +2,7 @@
 # TEST RATP module
 ###################
 import os
-from alinea.pyratp import pyratp
+from openalea.ratp.pyratp import ratp
 from numpy import *
 
 njx = 2

example/ratp_script.py

@@ -1,9 +1,9 @@
 import numpy as np
-from alinea.pyratp.skyvault import Skyvault
-from alinea.pyratp.grid import Grid
-from alinea.pyratp.vegetation import Vegetation
-from alinea.pyratp.micrometeo import MicroMeteo
-from alinea.pyratp.runratp import runRATP
+from openalea.ratp.pyratp.skyvault import Skyvault
+from openalea.ratp.pyratp.grid import Grid
+from openalea.ratp.pyratp.vegetation import Vegetation
+from openalea.ratp.pyratp.micrometeo import MicroMeteo
+from openalea.ratp.pyratp.runratp import runRATP
 
 import sys
 

meson.build

@@ -0,0 +1,10 @@
+project('PyRATP', 'c',
+  version : '1.0.0',
+  license: 'CeCILL-C',
+  meson_version: '>=0.64.0',
+  default_options : ['warning_level=0'],
+)
+
+add_languages('fortran')
+
+subdir('src/openalea/ratp')