chore: Upgrade Python requirements

[edx-requirements-bot]

Python requirements update. Please review the changelogs for the upgraded packages.

Deleted obsolete pull_requests:
#37623

[edx-requirements-bot]

List of packages in the PR without any issue.

• annotated-doc changes from 0.0.3 to 0.0.4
• boto3 changes from 1.40.66 to 1.40.70
• botocore changes from 1.40.66 to 1.40.70
• coverage changes from 7.11.0 to 7.11.3
• coverage[toml] changes from 7.11.0 to 7.11.3
• diff-cover changes from 9.7.1 to 9.7.2
• django-appconf changes from 1.1.0 to 1.2.0
• django-countries changes from 8.0.0 to 8.0.1
• edx-codejail changes from 4.0.0 to 4.1.0
• fastapi changes from 0.121.0 to 0.121.1
• google-api-python-client changes from 2.186.0 to 2.187.0
• google-auth changes from 2.42.1 to 2.43.0
• googleapis-common-protos changes from 1.71.0 to 1.72.0
• import-linter changes from 2.5.2 to 2.6
• pycasbin changes from 2.4.0 to 2.6.0
• pydantic-settings changes from 2.11.0 to 2.12.0
• pynacl changes from 1.6.0 to 1.6.1
• semgrep changes from 1.142.0 to 1.142.1
• wrapt changes from 2.0.0 to 2.0.1
• xblocks-contrib changes from 0.6.0 to 0.7.1

[edx-requirements-bot]

These Packages need manual review..

• [MAJOR] pytest changes from 8.4.2 to 9.0.0