Update action versions

[mattwthompson]

• Update some actions which were on old (major) versions
• Drop micromamba-version shim
• Add Dependabot to automate action updates

[github-actions]

This repository caches data generated from notebooks stored in other repositories in the _cookbook_data_* branches. Regenerating this cache takes about half an hour, so it is not done automatically in PRs. The current value of the cache from the main branch has been copied over to this PR's cache.

To regenerate the cache for this PR, create a comment on this PR consisting only of the string:

/regenerate-cache

[Yoshanuikabundi]

/regenerate-cache

[github-actions]

A workflow has been dispatched to regenerate the cookbook cache for this PR.

• Run ID: 13710345517
• Triggering actor: github-actions[bot]
• Target branch: update-actions
• Deployment branch: _cookbook_data_PR73

[github-actions]

A workflow dispatched to regenerate the cookbook cache for this PR has just finished.

• Run ID: 13710345517
• Triggering actor: github-actions[bot]
• Target branch: update-actions
• Deployment branch: _cookbook_data_PR73
• Job status: failure
• Notebooks status: N/A

Changes will only be visible in the ReadTheDocs preview after it has been rebuilt.

[Yoshanuikabundi]

What a strange error. https://xkcd.com/242/

[Yoshanuikabundi]

/regenerate-cache

[github-actions]

A workflow has been dispatched to regenerate the cookbook cache for this PR.

• Run ID: 13712878684
• Triggering actor: github-actions[bot]
• Target branch: update-actions
• Deployment branch: _cookbook_data_PR73

[github-actions]

A workflow dispatched to regenerate the cookbook cache for this PR has just finished.

• Run ID: 13712878684
• Triggering actor: github-actions[bot]
• Target branch: update-actions
• Deployment branch: _cookbook_data_PR73
• Job status: failure
• Notebooks status: 28 / 31 notebooks successfully executed (0 failures ignored)
• Failing notebooks:
  • openforcefield/openff-nagl/train-gnn-to-electric-field/train-gnn-to-electric-field.ipynb
  • openforcefield/openff-nagl/train-multi-objective-gnn/train-gnn-notebook.ipynb
  • openforcefield/openff-nagl/train-gnn-notebook/train-gnn-notebook.ipynb
  • [ignored]

Changes will only be visible in the ReadTheDocs preview after it has been rebuilt.

[mattwthompson]

Baffling, I didn't think anything here was that offensive ... I'm happy with the other approach of bumping them one by one

[Yoshanuikabundi]

/regenerate-cache

[github-actions]

A workflow has been dispatched to regenerate the cookbook cache for this PR.

• Run ID: 13775506408
• Triggering actor: github-actions[bot]
• Target branch: update-actions
• Deployment branch: _cookbook_data_PR73

[github-actions]

A workflow dispatched to regenerate the cookbook cache for this PR has just finished.

• Run ID: 13775506408
• Triggering actor: github-actions[bot]
• Target branch: update-actions
• Deployment branch: _cookbook_data_PR73
• Job status: success
• Notebooks status: 30 / 31 notebooks successfully executed (1 failures ignored)

• Failing notebooks:

  • [ignored] openforcefield/openff-toolkit/external/swap_amber_parameters/swap_existing_ligand_parameters.ipynb

Changes will only be visible in the ReadTheDocs preview after it has been rebuilt. You will need to be logged in to ReadTheDocs to see the rebuild option.

[Yoshanuikabundi]

OK I'm happy to chalk that failure up to a cosmic ray or server error. Thanks for your work on this @mattwthompson, it'll get us a good head start on merging the dependabot PRs.