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Updates to Examples#798

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dwhswenson merged 11 commits intoopenpathsampling:masterfrom
dwhswenson:examples
Oct 6, 2018
Merged

Updates to Examples#798
dwhswenson merged 11 commits intoopenpathsampling:masterfrom
dwhswenson:examples

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@dwhswenson
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This includes several updates I've made to the examples, most significantly a bunch of changes that make some examples match the papers better.

This also includes #768. (Although I don't think that problem is fully solved.)

This should be merged soon, since these changes were mentioned in our response to the reviewers.

@dwhswenson dwhswenson requested a review from jhprinz September 30, 2018 09:35
@dwhswenson dwhswenson added this to the 0.96 milestone Oct 4, 2018
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Besides the note on py3 / py2 looks good. I like the simplification in variables.

"version": "3.6.1"
"pygments_lexer": "ipython2",
"version": "2.7.15"
}
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I think this change from python 3 to 2 should not matter, right? These notebooks should be compatible with both anyway...

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This changes to whatever you used the last time you saved the notebooks. I was in Py 2.7 when I made the updates here. But these notebooks are run in our test suite, so as long as tests pass, they must work with both Python 2 and 3!

@dwhswenson dwhswenson merged commit a6f36c2 into openpathsampling:master Oct 6, 2018
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