Update scvi-tools requirement from ~=0.19 to ~=0.20 in /docker/openproblems-r-pytorch

[dependabot]

Updates the requirements on scvi-tools to permit the latest version.

Release notes

Sourced from scvi-tools's releases.

scvi-tools 0.20.0

See the release notes for all changes.

This release is available via PyPi:

pip install scvi-tools

Conda availability will follow (< 2 days typically)

Please report any issues on GitHub.

Commits

• 486e3e4 Release 0.20.0 (#1888)
• 3792568 update tutorials, bump beta, fix tutorials index (#1886)
• 6cb0709 Use cellxgene download in HubModel when needed (#1884)
• 744ba4c Update README.md (#1885)
• e361b64 Implement dev container for Codespaces (#1836)
• 2681234 Scbasset fixes 2 (#1882)
• 0b820b2 Add autotune, scBasset batch tutorials (#1879)
• a9e85e8 cellxgene download function (#1880)
• 495e5bc Fix basset architecture (#1874)
• bf75e99 Rename: latent -> minified (#1876)
• Additional commits viewable in compare view

You can trigger a rebase of this PR by commenting @dependabot rebase.

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[github-actions]

[codecov]

Codecov Report

Patch coverage: 98.55% and project coverage change: -0.07 ⚠️

Comparison is base (9d16650) 95.60% compared to head (f7e21aa) 95.53%.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #814      +/-   ##
==========================================
- Coverage   95.60%   95.53%   -0.07%     
==========================================
  Files         187      187              
  Lines        4980     5063      +83     
  Branches      273      279       +6     
==========================================
+ Hits         4761     4837      +76     
- Misses        141      147       +6     
- Partials       78       79       +1     

Flag	Coverage Δ
unittests	95.53% <98.55%> (-0.07%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
...ration/batch_integration_embed/metrics/cc_score.py	100.00% <ø> (ø)
...n/batch_integration_embed/metrics/iso_label_sil.py	100.00% <ø> (ø)
...ntegration/batch_integration_embed/metrics/kBET.py	100.00% <ø> (ø)
...integration/batch_integration_embed/metrics/pcr.py	100.00% <ø> (ø)
...ation/batch_integration_embed/metrics/sil_batch.py	100.00% <ø> (ø)
...tion/batch_integration_embed/metrics/silhouette.py	100.00% <ø> (ø)
...ch_integration_feature/metrics/hvg_conservation.py	100.00% <ø> (ø)
...tegration/batch_integration_graph/methods/bbknn.py	100.00% <ø> (ø)
...egration/batch_integration_graph/methods/combat.py	100.00% <ø> (ø)
...gration/batch_integration_graph/methods/fastmnn.py	100.00% <ø> (ø)
... and 82 more

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[dependabot]

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot rebase.

[dependabot]

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot rebase.

[dependabot]

A newer version of scvi-tools exists, but since this PR has been edited by someone other than Dependabot I haven't updated it. You'll get a PR for the updated version as normal once this PR is merged.

[scottgigante-immunai]

Passed at https://tower.nf/orgs/openproblems-bio/workspaces/openproblems-bio/watch/jEapwwdyxIn3M