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@LouisK92 LouisK92 commented Mar 14, 2025

Describe your changes

Added a breast cancer scRNAseq reference.

Tested the component with

viash run src/datasets/loaders/wu_human_breast_cancer_sc/config.vsh.yaml -- --output ../data_tmp/2021Wu_human_breast_cancer_sc.h5ad

Tested the dataset download + process workflow with

viash ns build
bash src/datasets/workflows/process_wu_human_breast_cancer_sc/test.sh

I couldn't get my seqera access working yet, the script

task_ist_preprocessing/scripts/create_resources/process_wu_human_breast_cancer_sc.sh

should also work due its similarity to the local one. But needs to be tested.

Checklist before requesting a review

  • I have performed a self-review of my code

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Bug fixes
  • Proposed changes are described in the CHANGELOG.md

  • CI Tests succeed and look good!

@LouisK92 LouisK92 merged commit 5b83d8e into main Mar 14, 2025
2 checks passed
@LouisK92 LouisK92 deleted the 2021Wu_human_breast_cancer_sc branch March 14, 2025 17:10
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2 participants