Repositories list

• AntiPd_SM254

  Public
  🦠🍄Study on genome and functional analysis of Streptomyces albidoflavus SM254

  phylogeneticsgenomic-data-analysispangenome+ 1

  phylogeneticsgenomic-data-analysispangenomekegganog

  Jupyter Notebook

  •0•0•0•0•Updated Jan 7, 2026Jan 7, 2026

• beyondWNS

  Public
  🍄🦇Study on dating and functional annotation of Pseudogymnoascus destructans

  phylogeneticsgenomic-data-analysispangenome

  phylogeneticsgenomic-data-analysispangenome

  Jupyter Notebook

  •0•1•0•0•Updated Jan 7, 2026Jan 7, 2026

• PhoACr

  Public
  🦇🦠Study on detection of α-CoV in bats of Rostov and Novosibirsk (Russia)

  mappipelinephylogenetics+ 3

  mappipelinephylogeneticsbatspcr-primersequence-analysis

  R

  •0•0•0•0•Updated Jan 7, 2026Jan 7, 2026

• PhoBl

  Public
  🦇🦠🌳Study on detection of Brno loanvirus in Southern Russia

  pipelinebiopythonphylogenetics+ 7

  pipelinebiopythonphylogeneticsentrezbatsiq-treemafftlab-journalitolhantavirus

  Jupyter Notebook

  •0•1•0•0•Updated Jan 7, 2026Jan 7, 2026

• BatShotMetaFlow

  Public
  🦇🧫📊Study on bat gut shotgun metagenomics

  phylogeneticsbeta-diversitymicrobial-communities+ 16

  phylogeneticsbeta-diversitymicrobial-communitiesblastspadesdifferential-abundance-analysesfastq-filesrefseqalpha-diversityprokka+ 9

  Jupyter Notebook

  •1•1•0•0•Updated Jan 7, 2026Jan 7, 2026

• KrakenParser

  Public
  🗂️Parse multiple Kraken2 reports into CSV files on 6 taxonomical levels

  metagenomicsmetagenomic-pipelinekraken2+ 1

  metagenomicsmetagenomic-pipelinekraken2krakentools

  Python

  •

  MIT License

  •0•3•0•0•Updated Jul 17, 2025Jul 17, 2025

• PanSaPhPrim

  Public
  🦠🧬 Study on designing degenerate PCR primers for Salmonella phages

  decipherpangenomic-analysislab-journal+ 2

  decipherpangenomic-analysislab-journalpcr-primer-designpanacota

  Jupyter Notebook

  •0•1•0•0•Updated Feb 19, 2025Feb 19, 2025

• .github

  Public
  Repo for GitHub organization page

  0•0•0•0•Updated Aug 23, 2024Aug 23, 2024