Skip to content

New example files #17

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
emmahodcroft merged 1 commit into from
Mar 12, 2026
Merged

New example files #17

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
8 changes: 8 additions & 0 deletions example_files/dengue_test_metadata.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
id geoLocCountry sampleCollectionDate authors authorAffiliations hostNameScientific collectionDevice collectionMethod cultureId depthOfCoverage geoLocAdmin1 geoLocAdmin2 sampleReceivedDate sequencingDate specimenProcessing sequencingInstrument sequencingProtocol specimenCollectorSampleId versionComment comment
GU363549.1 China 2009-08-06 "Zhang, F. C.; Hu, F. Y.; Zhou, W. Z.; Wang, J.; Hong, W. X.; Liao, B. L.; Chen, W. L.; Lu, Y. C.; Tang, Y. B.; Wei, S. J." "Guangzhou No. 8 People's Hospital, Institute of Infectious Disease" Homo sapiens Guangzhou Hogwarts GZ1D3 Example data from Pathoplexus
HM469966.1 Thailand 2007-07-27 "Lambrechts, L.; Quillery, E.; Noel, V.; Richardson, J. H.; Jarman, R. G.; Scott, T. W.; Chevillon, C." "Institut Pasteur, Virology" Homo sapiens Bangkok Hogwarts 01096-07 Example data from Pathoplexus
JN697056.1 Malaysia 2005-01-01 "Chem, Y. K.; Chua, K. B.; Yasmin, A. M." "Natonal Public Health Laboratory, Microbiology" Homo sapiens Hogwarts DEN-1/Thailand/01096-07/2005 Example data from Pathoplexus
EU081263.1 Singapore 2005 "Schreiber, M. J.; Holmes, E. C.; Ong, S. H.; Soh, H. S.; Liu, W.; Tanner, L.; Aw, P. P.; Tan, H. C.; Ng, L. C.; Leo, Y. S.; Low, J. G.; Ong, A.; Ooi, E. E.; Vasudevan, S. G.; Hibberd, M. L." "Novartis Institute for Tropical Diseases, Bioinformatics" Culicidae Hogwarts Samples pooled D1/SG/05K4174DK1/2005 Example data from Pathoplexus
EU920848.1 French Guiana 2006-04 "Dussart, P.; Iteman, I.; Leduc, A.; Delannoy, A. S.; Tran, C.; Matheus, S.; Najioullah, F.; Soebhag-Ramlal, T.; Tjon Kon Fat, H.; Cesaire, R.; Caro, V.; Brisse, S.; Chevillon, C." "Institut Pasteur de la Guyane, Laboratoire de Virologie, Centre National de Reference des Arbovirus et Virus Influenza, Region Antilles Guyane" Aedes aegypti Hogwarts FGU-Apr2-06 Example data from Pathoplexus
JN983813.1 Brazil 2010-09-08 "Naveca, F. G.; Souza, V. C.; Silva, G. A.; Maito, R. M.; Granja, F.; Siqueira, T.; Acosta, P. O.; Silva, G. A. V." "Instituto Leonidas e Maria Deane, Biodiversity Lab" Homo sapiens "Boa Vista, Roraima State" Hogwarts Br246RR_10 Example data from Pathoplexus
KC294210.1 Peru 2011-03-23 "Williams, M.; Mayer, S. V.; Johnson, W. L.; Chen, R.; Volkova, E.; Vilcarromero, S.; Widen, S. G.; Wood, T. G.; Suarez-Ognio, L.; Long, K. C.; Hanley, K. A.; Morrison, A. C.; Vasilakis, N.; Halsey, E. S.; Wilden, S.; Wood, T." "U.S. NAMRU-6, Virology" Homo sapiens Iquitos Hogwarts DENV-2/PE/FPI1617/2011 Example data from Pathoplexus
Loading