can the input be the reads of metagenomes

[FengqingWang0712]

Dear all,
I wonder can the input of EukRep be the paired reads of metagenomes. Thanks

[patrickwest]

Hi FengqingWang0712,

Prediction quality drops pretty precipitously on sequence lengths <1000bp. You could try it but I would take the results with a large grain of salt.