Celera Assembler

This is a minor fork of the Celera Assembler, based on version 8.2beta. Modifications are in the tooling, and are intended to get it to run in our development workflows (only OS X for now).

Requirements

• gcc/g++ 4.9 (Homebrew has it as the default gcc)

Installation

Compile kmer:

cd kmer
CC=gcc-4.9 CXX=g++-4.9 ./configure.sh
make
make install
cd ..

Compile samtools:

cd samtools
make
cd ..

Compile src:

cd src
make
cd ..