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@phgenomics-singularity

Public Health Genomics

Dedicated to making available open source tools for microbial genomics in Singularity containers

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  1. mlst mlst Public

    Singularity container for MLST

    Python 1 1

  2. ngmaster ngmaster Public

    Singularity container for NGMASTER

    Roff 1

  3. hltools hltools Public

    A Singularity recipe for samtools, bcftools, minimap2, bwa, and seqtk

    Shell 1

  4. abricate abricate Public

    An abricate singularity recipe

    Python 1

  5. shovill shovill Public

    A shovill singularity recipe

    1

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