This Repository Contains Analysis of CDI Data.
The "Data" folder contains the necessary datasets for running code
The "CDIAnalysis.ipynb" notebook contains the SVM, RF, and ANN modeling of Fungi, Bacterial, and Combined Taxa Expressed Data. The "LEfSeSelectedAnalysis.ipynb" notebook contains SVM, RF, and ANN modeling of LEfSe Selected Fungi Gene and Species Data, Bacterial Species Data, and Combined Gene Data. The "CombinedLEfSeSpeciesAnalysis.ipynb" notebook contains SVM, RF, and ANN modeling of LEfSe Selected Combined Species Data with and without C. Difficile.