* upgrade to numpy 2
* upgrade openstructure, networkit
* fix: python 3.12 support
* fix: force LD_LIBRARY_PATH to conda
* chore: update development.md
* Proxima (formerly VantAI)
* test: update tests for updated call signatures
* Update tests/core/test_core_system.py
* Update tests/test_annotations.py

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Co-authored-by: Thomas Duignan <thomas.j.duignan@gmail.com>
Co-authored-by: Tom Duignan <tjduigna@users.noreply.github.com>