Add and update requested tools according to the workflow#68
Add and update requested tools according to the workflow#68
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Created manifests for cli-anything and sem as remote repos. Updated the codex-cli manifest to include the 'Reference' tag. Verified that jean and jules are already present and correctly configured. Co-authored-by: popemkt <35656480+popemkt@users.noreply.github.com>
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📝 WalkthroughWalkthroughThree app manifest configurations are introduced or updated for the Nxus platform: CLI-Anything and Sem are newly added with complete manifest definitions (commands, dependencies, installation configs), while Codex-CLI's existing manifest is updated with a reference tag. Changes
Estimated Code Review Effort🎯 2 (Simple) | ⏱️ ~12 minutes Poem
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Actionable comments posted: 3
🤖 Prompt for all review comments with AI agents
Verify each finding against the current code and only fix it if needed.
Inline comments:
In `@apps/nxus-core/src/data/apps/cli-anything/manifest.json`:
- Around line 39-42: The root-level "installConfig" entry in manifest.json
incorrectly runs `pip install -e .` at the repository root; remove the entire
"installConfig" object from
apps/nxus-core/src/data/apps/cli-anything/manifest.json so the manifest no
longer executes an installation in the wrong location, or if this was intended
for generated apps instead, move or re-add an installConfig into the generated
app’s manifest with the script updated to change into the agent-harness
directory (e.g., `cd agent-harness && pip install -e .`) so the install runs in
the correct subdirectory.
In `@apps/nxus-core/src/data/apps/codex-cli/manifest.json`:
- Around line 39-45: Update the manifest's metadata.updatedAt timestamp to the
current ISO 8601 time so the file reflects the recent change; specifically edit
manifest.json's "metadata" block (the "updatedAt" field next to "createdAt") and
set it to the new current timestamp, ensuring the format matches the existing
ISO 8601 string.
In `@apps/nxus-core/src/data/apps/sem/manifest.json`:
- Around line 30-43: Update the manifest so the install command matches Sem's
README: change installConfig.script to navigate into the crates directory and
run cargo install --path sem-cli (e.g., "cd crates && cargo install --path
sem-cli"), and add "cargo" to the top-level dependencies array so the required
tool is declared; modify the installConfig.script and dependencies entries in
the manifest.json accordingly.
ℹ️ Review info
⚙️ Run configuration
Configuration used: defaults
Review profile: CHILL
Plan: Pro
Run ID: 5fc9a162-c56e-4774-bef6-02db80cc0199
📒 Files selected for processing (3)
apps/nxus-core/src/data/apps/cli-anything/manifest.jsonapps/nxus-core/src/data/apps/codex-cli/manifest.jsonapps/nxus-core/src/data/apps/sem/manifest.json
| "installConfig": { | ||
| "script": "pip install -e .", | ||
| "platform": ["linux", "macos", "windows"] | ||
| } |
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🧩 Analysis chain
🏁 Script executed:
# First, examine the manifest.json file to understand context
cat -n apps/nxus-core/src/data/apps/cli-anything/manifest.jsonRepository: popemkt/nxus
Length of output: 1769
🏁 Script executed:
# Search for any CLI-Anything related documentation or references in the repo
rg -i "cli-anything" --type json --type md -A 3 -B 3Repository: popemkt/nxus
Length of output: 2808
🏁 Script executed:
# Check for other manifest files to see if there's a pattern
find apps/nxus-core/src/data/apps -name "manifest.json" -type fRepository: popemkt/nxus
Length of output: 3708
🌐 Web query:
CLI-Anything installation documentation github.com/HKUDS/CLI-Anything README setup
💡 Result:
CLI-Anything (HKUDS/CLI-Anything) — README setup / installation
Prerequisites
- Python 3.10+
- The target software installed (e.g., GIMP/Blender/LibreOffice)
- A supported AI coding agent (e.g., Claude Code or OpenCode) [1]
Install (Claude Code)
/plugin marketplace add HKUDS/CLI-Anything
/plugin install cli-anything
Then run (example):
/cli-anything:cli-anything ./gimp
(If Claude Code is under 2.x, use /cli-anything instead.) [1]
Manual install (Claude Code plugin):
git clone https://github.com/HKUDS/CLI-Anything.git
cp -r CLI-Anything/cli-anything-plugin ~/.claude/plugins/cli-anythingThen in Claude Code:
/reload-plugins
[2]
Install (OpenCode)
git clone https://github.com/HKUDS/CLI-Anything.git
# Global install
cp CLI-Anything/opencode-commands/*.md ~/.config/opencode/commands/
cp CLI-Anything/cli-anything-plugin/HARNESS.md ~/.config/opencode/commands/
# Or project-level install
cp CLI-Anything/opencode-commands/*.md .opencode/commands/
cp CLI-Anything/cli-anything-plugin/HARNESS.md .opencode/commands/This adds slash commands like /cli-anything, /cli-anything-refine, /cli-anything-test, /cli-anything-validate, /cli-anything-list. [2]
Use the generated CLI (after generation)
Example from the README:
cd gimp/agent-harness && pip install -e .
cli-anything-gimp --help[1]
Sources: GitHub README for HKUDS/CLI-Anything. [1][2]
Remove installConfig — it references incorrect installation step for this remote repo.
CLI-Anything's documented setup involves cloning the repo, copying plugin files, generating a CLI wrapper, and then running pip install -e . from within the generated app's agent-harness directory. The manifest's root-level installConfig does not match this flow and would execute at the wrong location. Either remove this config or document the correct subdirectory path if intended for generated app scenarios. (github.com/HKUDS/CLI-Anything)
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed.
In `@apps/nxus-core/src/data/apps/cli-anything/manifest.json` around lines 39 -
42, The root-level "installConfig" entry in manifest.json incorrectly runs `pip
install -e .` at the repository root; remove the entire "installConfig" object
from apps/nxus-core/src/data/apps/cli-anything/manifest.json so the manifest no
longer executes an installation in the wrong location, or if this was intended
for generated apps instead, move or re-add an installConfig into the generated
app’s manifest with the script updated to change into the agent-harness
directory (e.g., `cd agent-harness && pip install -e .`) so the install runs in
the correct subdirectory.
| "metadata": { | ||
| "tags": [], | ||
| "tags": [ | ||
| { "id": "reference", "name": "Reference" } | ||
| ], | ||
| "category": "development-tools", | ||
| "createdAt": "2026-02-25T14:00:00Z", | ||
| "updatedAt": "2026-02-25T14:00:00Z", |
There was a problem hiding this comment.
Refresh metadata.updatedAt when changing the manifest.
Line 45 still reports the old timestamp even though this PR modifies the metadata block. That leaves the manifest with stale freshness data.
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed.
In `@apps/nxus-core/src/data/apps/codex-cli/manifest.json` around lines 39 - 45,
Update the manifest's metadata.updatedAt timestamp to the current ISO 8601 time
so the file reflects the recent change; specifically edit manifest.json's
"metadata" block (the "updatedAt" field next to "createdAt") and set it to the
new current timestamp, ensuring the format matches the existing ISO 8601 string.
| "dependencies": ["git"], | ||
| "metadata": { | ||
| "tags": [ | ||
| { "id": "useful", "name": "Useful" } | ||
| ], | ||
| "category": "development-tools", | ||
| "createdAt": "2026-03-12T00:00:00Z", | ||
| "updatedAt": "2026-03-12T00:00:00Z", | ||
| "version": "1.0.0", | ||
| "author": "Ataraxy-Labs" | ||
| }, | ||
| "installConfig": { | ||
| "script": "cargo install --path .", | ||
| "platform": ["linux", "macos", "windows"] |
There was a problem hiding this comment.
🧩 Analysis chain
🏁 Script executed:
# First, check if the manifest file exists and read its content
cat -n apps/nxus-core/src/data/apps/sem/manifest.jsonRepository: popemkt/nxus
Length of output: 1819
🌐 Web query:
Sem CLI installation requirements Ataraxy-Labs repository
💡 Result:
Sem CLI (Ataraxy-Labs/sem) installation requirements (by install method)
- Build from source / install via Cargo: requires the Rust toolchain (Cargo), plus Git to clone the repo. (github.com)
- Prebuilt binary (GitHub Releases): no build tools required—download a release binary appropriate for your OS/arch. (github.com)
- Docker-based install/run: requires Docker (build image + run container). (github.com)
- Homebrew install (macOS/Linux): requires Homebrew (
brew install ataraxy-labs/tap/sem). (ataraxy-labs.github.io)
Citations:
- 1: https://github.com/Ataraxy-Labs/sem
- 2: https://github.com/Ataraxy-Labs/sem
- 3: https://github.com/Ataraxy-Labs/sem
- 4: https://ataraxy-labs.github.io/sem/
🌐 Web query:
Sem Ataraxy-Labs repository structure crates/sem-cli cargo install README
💡 Result:
- Repository layout (high level): the
Ataraxy-Labs/semrepo contains a Rust Cargo workspace undercrates/plus other top-level folders likesrc/,docs/,site/, etc. (github.com) - Workspace crates:
crates/includes (at least) two crates:crates/sem-core/(library)crates/sem-cli/(binary CLI) (github.com)
crates/sem-clistructure: the CLI crate directory containssrc/and itsCargo.toml. (github.com)
Install (sem-cli) per README/docs
- Direct from git (no clone):
(ataraxy-labs.github.io)
cargo install --git https://github.com/Ataraxy-Labs/sem sem-cli
- From a local clone (path install):
(github.com)
git clone https://github.com/Ataraxy-Labs/sem cd sem/crates cargo install --path sem-cli
Citations:
- 1: https://github.com/Ataraxy-Labs/sem
- 2: https://github.com/Ataraxy-Labs/sem/tree/main/crates
- 3: https://github.com/Ataraxy-Labs/sem/tree/main/crates/sem-cli
- 4: https://ataraxy-labs.github.io/sem/
- 5: https://github.com/Ataraxy-Labs/sem
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installConfig.script and missing Cargo dependency.
The manifest runs cargo install --path ., but Sem's source install (documented in the README) requires navigating to crates/ and running cargo install --path sem-cli. The command targets the wrong directory, and the manifest also omits cargo from dependencies despite being a required tool for the install script.
Suggested manifest fix
- "dependencies": ["git"],
+ "dependencies": ["git", "cargo"],
...
"installConfig": {
- "script": "cargo install --path .",
+ "script": "cargo install --path crates/sem-cli",
"platform": ["linux", "macos", "windows"]
}📝 Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.
| "dependencies": ["git"], | |
| "metadata": { | |
| "tags": [ | |
| { "id": "useful", "name": "Useful" } | |
| ], | |
| "category": "development-tools", | |
| "createdAt": "2026-03-12T00:00:00Z", | |
| "updatedAt": "2026-03-12T00:00:00Z", | |
| "version": "1.0.0", | |
| "author": "Ataraxy-Labs" | |
| }, | |
| "installConfig": { | |
| "script": "cargo install --path .", | |
| "platform": ["linux", "macos", "windows"] | |
| "dependencies": ["git", "cargo"], | |
| "metadata": { | |
| "tags": [ | |
| { "id": "useful", "name": "Useful" } | |
| ], | |
| "category": "development-tools", | |
| "createdAt": "2026-03-12T00:00:00Z", | |
| "updatedAt": "2026-03-12T00:00:00Z", | |
| "version": "1.0.0", | |
| "author": "Ataraxy-Labs" | |
| }, | |
| "installConfig": { | |
| "script": "cargo install --path crates/sem-cli", | |
| "platform": ["linux", "macos", "windows"] |
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed.
In `@apps/nxus-core/src/data/apps/sem/manifest.json` around lines 30 - 43, Update
the manifest so the install command matches Sem's README: change
installConfig.script to navigate into the crates directory and run cargo install
--path sem-cli (e.g., "cd crates && cargo install --path sem-cli"), and add
"cargo" to the top-level dependencies array so the required tool is declared;
modify the installConfig.script and dependencies entries in the manifest.json
accordingly.
Created manifests for cli-anything and sem as remote repos. Updated the codex-cli manifest to include the 'Reference' tag. Verified that jean and jules are already present and correctly configured. Co-authored-by: popemkt <35656480+popemkt@users.noreply.github.com>
1 participant
Created manifests for cli-anything and sem as remote repos. Updated the codex-cli manifest to include the 'Reference' tag. Verified that jean and jules are already present and correctly configured.
PR created automatically by Jules for task 14952204770370296087 started by @popemkt
Summary by CodeRabbit