Installation recommendations #265
Description
Hi,
I am trying to install smc++. I don't have administrator privileges, so I am trying to install it locally.
I created a python virtual environment where I insatlled numpy. Then I downloaded installed following libraries locally:
Python-3.9.18.tar.xz
gmp-6.3.0.tar.xz
gsl-latest.tar.gz
mpfr-4.2.1.tar.xz
Like this
./configure --prefix=$HOME/local
make
make install
All of them, except mpfr, I install it like this:
./configure --prefix=$HOME/local --with-gmp=$HOME/local
make
make install
Finally I added them to my path like this:
export PATH=$HOME/local/bin:$PATH
export LD_LIBRARY_PATH=$HOME/local/lib:$LD_LIBRARY_PATH
export C_INCLUDE_PATH=$HOME/local/include:$C_INCLUDE_PATH
export CPLUS_INCLUDE_PATH=$HOME/local/include:$CPLUS_INCLUDE_PATH
I donwloaded and tried to install smcc++ like this:
git clone https://github.com/popgenmethods/smcpp.git
python setup.py install
After several attempts (including switching Python versions), I am still encountering errors. The most recent one is
etup.py build: smcpp/_smcpp.cpp: At global scope:
smcpp/_smcpp.cpp:34397:18: warning: ‘PyObject* __Pyx_PyDict_GetItem(PyObject*, PyObject*)’ defined but not used [-Wunused-function]
34397 | static PyObject *__Pyx_PyDict_GetItem(PyObject d, PyObject key) {
| ^~~~~~~~~~~~~~~~~~~~
error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code
Unfortunately, I also can't use Docker as I don't have administrator privileges.
Do you recommend using different versions of the following?
Python-3.9.18.tar.xz, gmp-6.3.0.tar.xz, gsl-latest.tar.gz, mpfr-4.2.1.tar.xz
Any suggestions would be greatly appreciated.
Many thanks,
Eric