README

1. Miniconda3/Anaconda3 Installation

mkdir -p ~/miniconda3 wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/ miniconda3/miniconda.sh bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3 rm -rf ~/miniconda3/miniconda.sh ~/miniconda3/bin/conda init bash

For Ubuntu Users guarantee that the GLIBCXX_3.4.29 is properly installed, if this is not the case update with sudo apt install libstdc++6 libc6

2. For the local installation on a Linux machine it is necesary guarantee the dependencies throught the conda enviroment, use the command inside the phallet_graph directory

conda config --add channels defaults conda config --add channels conda-forge conda config --add channels bioconda

conda env create --file dependencies.yaml

3. Using the bash scripts 06.Wraggling and 07.Graphing.sh for generate panels for the default version use:

bash 06.wraggling.sh bash 07.Graphing.sh

Inside the folder there is going to generate csv resumes and the graphs saved as PFDs