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v0.2.0

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@quentinblampey quentinblampey released this 03 Dec 18:11
· 395 commits to main since this release

[0.2.0] - 2024-12-03

Added

  • novae.plot.connectivities(...) to show the cells neighbors
  • novae.settings.auto_processing = False to enforce using your own preprocessing
  • Tutorials update (more plots and more details)

Fixed

  • Issue with library_id in novae.plot.domains (#8)
  • Set pandas>=2.0.0 in the dependencies (#5)

Breaking changes

  • novae.utils.spatial_neighbors must always be run, to force the user having more control on it
  • For multi-slide mode, the slide_key argument should now be used in novae.utils.spatial_neighbors (and only there)
  • Drop python 3.9 support (because dropped in anndata)