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v2.6.4 "___BEACON_ROOT___"

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@mbaudis mbaudis released this 23 Oct 13:45
· 298 commits to main since this release
f91cb51
  • changed from hard coded https://progenetix.org to template ___BEACON_ROOT___
    in map, schema and configuration files and for handover generation
    • the ___BEACON_ROOT___ is replaced during request processing through the
      detected f"{REQUEST_SCHEME}://{HTTP_HOST}"
  • fixed UCSC link generation for BeaconPlus
  • removed beaconMap.yaml from schemas, since now part of config/beacon_map.yaml
  • renamed ENV to HTTP_HOST for consistency
  • new dict_replace_values function in bycon_helpers.py

... and from 2.6.3

  • schema file restructuring
    • removed all JSON schemas fromn the source tree since they are generated
      from YAML anyway and changed the file targets in schema_parsing.py to
      .yaml accordingly
    • flattened schema hierarchy structure since there is no need to distinguish
      between src and json directories anymore
    • removed the schemas/bin directory since no json files are generated anymore
    • adjusted documentation generation in markdowner.py accordingly
  • cleaned out code w/ removal of "pgxVariant" references since using vrsVariant
    • e.g. in ByconVariant and ByconBundler