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feat: optionally disable progress bar in fci #125

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Aug 1, 2023
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feat: optionally disable progress bar in fci #125

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4 changes: 2 additions & 2 deletions causallearn/search/ConstraintBased/FCI.py
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Original file line number Diff line number Diff line change
Expand Up @@ -693,7 +693,7 @@ def _contains_all(set_a: Set[Node], set_b: Set[Node]):


def fci(dataset: ndarray, independence_test_method: str=fisherz, alpha: float = 0.05, depth: int = -1,
max_path_length: int = -1, verbose: bool = False, background_knowledge: BackgroundKnowledge | None = None,
max_path_length: int = -1, verbose: bool = False, background_knowledge: BackgroundKnowledge | None = None, show_progress: bool = True,
**kwargs) -> Tuple[Graph, List[Edge]]:
"""
Perform Fast Causal Inference (FCI) algorithm for causal discovery
Expand Down Expand Up @@ -755,7 +755,7 @@ def fci(dataset: ndarray, independence_test_method: str=fisherz, alpha: float =

# FAS (“Fast Adjacency Search”) is the adjacency search of the PC algorithm, used as a first step for the FCI algorithm.
graph, sep_sets, test_results = fas(dataset, nodes, independence_test_method=independence_test_method, alpha=alpha,
knowledge=background_knowledge, depth=depth, verbose=verbose)
knowledge=background_knowledge, depth=depth, verbose=verbose, show_progress=show_progress)

reorientAllWith(graph, Endpoint.CIRCLE)

Expand Down