What happened?
Got an error when calling data_tree.chunk('auto')
This is pretty frustrating, when xr.open_datatree supports it. I would expect both to be equivalent.
What did you expect to happen?
I expect it to succeed, and be equivalent to chunking the dataset, or opening the datatree with the chunks="auto" argument.
Both the type of the argument andthe docs imply this should work.
Minimal Complete Verifiable Example
# /// script
# requires-python = ">=3.11"
# dependencies = [
# "xarray[complete]@git+https://github.com/pydata/xarray.git@main",
# ]
# ///
#
# This script automatically imports the development branch of xarray to check for issues.
# Please delete this header if you have _not_ tested this script with `uv run`!
import xarray as xr
xr.show_versions()
# your reproducer code ...
import numpy as np
import xarray as xr
ds = xr.Dataset({"a": (("x", "y"), np.zeros((10, 5)))})
dt = xr.DataTree(ds)
ds.chunk("auto") # works
dt.chunk("auto") # TypeError
Steps to reproduce
uv run the above script.
MVCE confirmation
Relevant log output
Traceback (most recent call last):
File "/root/timaeus/.claude/worktrees/auto-chunking/repro_script.py", line 23, in <module>
dt.chunk("auto") # TypeError
^^^^^^^^^^^^^^^^
File "/.uv/cache/environments-v2/repro-script-8f1b2638dcd6a5aa/lib/python3.11/site-packages/xarray/core/datatree.py", line 2655, in
chunk
raise TypeError(
TypeError: invalid type for chunks: <class 'str'>. Only mappings are supported.
Anything else we need to know?
I've worked aorund with
dt.map_over_datasets(lambda ds: ds.chunk("auto"))
which I think is equivalent?
Environment
Details
INSTALLED VERSIONS
commit: None
python: 3.11.11 (main, Mar 17 2025, 21:02:09) [Clang 20.1.0 ]
python-bits: 64
OS: Linux
OS-release: 5.15.0-139-generic
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: C.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: 1.14.6
libnetcdf: 4.9.3
xarray: 2026.4.0
pandas: 3.0.2
numpy: 2.4.4
scipy: 1.17.1
netCDF4: 1.7.4
pydap: None
h5netcdf: None
h5py: None
zarr: 3.1.6
cftime: 1.6.5
nc_time_axis: None
iris: None
bottleneck: None
dask: 2026.3.0
distributed: 2026.3.0
matplotlib: 3.10.8
cartopy: None
seaborn: 0.13.2
numbagg: None
fsspec: 2025.3.0
cupy: None
pint: None
sparse: None
flox: None
numpy_groupies: None
setuptools: 82.0.1
pip: 26.0.1
conda: None
pytest: 7.4.3
mypy: None
IPython: 9.10.1
sphinx: 7.3.7
/root/timaeus/.venv/lib/python3.11/site-packages/_distutils_hack/init.py:30: UserWarning: Setuptools is replacing distutils. Support for replacing an already imported distutils is deprecated. In the future, this condition will fail. Register concerns at https://github.com/pypa/setuptools/issues/new?template=distutils-deprecation.yml
warnings.warn(
What happened?
Got an error when calling data_tree.chunk('auto')
This is pretty frustrating, when
xr.open_datatreesupports it. I would expect both to be equivalent.What did you expect to happen?
I expect it to succeed, and be equivalent to chunking the dataset, or opening the datatree with the chunks="auto" argument.
Both the type of the argument andthe docs imply this should work.
Minimal Complete Verifiable Example
Steps to reproduce
uv run the above script.
MVCE confirmation
Relevant log output
Anything else we need to know?
I've worked aorund with
dt.map_over_datasets(lambda ds: ds.chunk("auto"))which I think is equivalent?
Environment
Details
INSTALLED VERSIONS
commit: None
python: 3.11.11 (main, Mar 17 2025, 21:02:09) [Clang 20.1.0 ]
python-bits: 64
OS: Linux
OS-release: 5.15.0-139-generic
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: C.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: 1.14.6
libnetcdf: 4.9.3
xarray: 2026.4.0
pandas: 3.0.2
numpy: 2.4.4
scipy: 1.17.1
netCDF4: 1.7.4
pydap: None
h5netcdf: None
h5py: None
zarr: 3.1.6
cftime: 1.6.5
nc_time_axis: None
iris: None
bottleneck: None
dask: 2026.3.0
distributed: 2026.3.0
matplotlib: 3.10.8
cartopy: None
seaborn: 0.13.2
numbagg: None
fsspec: 2025.3.0
cupy: None
pint: None
sparse: None
flox: None
numpy_groupies: None
setuptools: 82.0.1
pip: 26.0.1
conda: None
pytest: 7.4.3
mypy: None
IPython: 9.10.1
sphinx: 7.3.7
/root/timaeus/.venv/lib/python3.11/site-packages/_distutils_hack/init.py:30: UserWarning: Setuptools is replacing distutils. Support for replacing an already imported distutils is deprecated. In the future, this condition will fail. Register concerns at https://github.com/pypa/setuptools/issues/new?template=distutils-deprecation.yml
warnings.warn(