Updates on brain example (WIP)

_toc.yml

@@ -27,7 +27,7 @@ parts:
   - file: tutorials/setup-config/tutorial-0
     title: Setup & Configuration
   - file: tutorials/cardiac-hemodynamics-assessment/tutorial
-  - file: tutorials/brain-disorder-diagnosis/tutorial
+  - file: tutorials/brain-disorder-diagnosis/tutorial-brain
     sections:
     - file: tutorials/brain-disorder-diagnosis/extend-reading/extension-tasks
       title: Extension Tasks

tutorials/brain-disorder-diagnosis/helpers/data.py

@@ -137,7 +137,7 @@ def _ensure_abide_file(data_dir, target_path, verbose):
             print(f"✔ File found: {target_path}")
         return
 
-    manifest_path = os.path.join(os.path.dirname(__file__), "manifests", "abide.json")
+    manifest_path = os.path.join(os.getcwd(), "manifests", "abide.json")
     with open(manifest_path, "r") as f:
         manifest = json.load(f)
 
@@ -163,7 +163,7 @@ def _ensure_atlas_folder(data_dir, atlas_path, verbose):
             print(f"✔ Atlas folder found: {atlas_path}")
         return
 
-    manifest_path = os.path.join(os.path.dirname(__file__), "manifests", "atlas.json")
+    manifest_path = os.path.join(os.getcwd(), "manifests", "atlas.json")
     with open(manifest_path, "r") as f:
         manifest = json.load(f)