-
-
Notifications
You must be signed in to change notification settings - Fork 657
Fixes issue #543 #572
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Merged
Merged
Fixes issue #543 #572
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Previous CM implementation suffered from the problem if target contains non-contiguous indices. New implementation is almost taken from torchvision's https://github.com/pytorch/vision/blob/master/references/segmentation/utils.py#L75-L117 This commit also removes the case of targets as (batchsize, num_categories, ...) where num_categories excludes background class. Confusion matrix computation is possible almost similarly for (batchsize, ...), but when target is all zero (0, ..., 0) = no classes (background class), then confusion matrix does not count any true/false predictions.
|
cc @TheCodez |
TheCodez
approved these changes
Aug 3, 2019
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
LGTM. I stopped working on my implementation because I couldn't get the tests to pass, so thanks for implementing 👍
anmolsjoshi
suggested changes
Aug 4, 2019
anmolsjoshi
approved these changes
Aug 4, 2019
vfdev-5
added a commit
that referenced
this pull request
Aug 30, 2019
* [WIP] Added cifar10 distributed example * [WIP] Metric with all reduce decorator and tests * [WIP] Added tests for accumulation metric * [WIP] Updated with reinit_is_reduced * [WIP] Distrib adaptation for other metrics * [WIP] Warnings for EpochMetric and Precision/Recall when distrib * Updated metrics and tests to run on distributed configuration - Test on 2 GPUS single node - Added cmd in .travis.yml to indicate how to test locally - Updated travis to run tests in 4 processes * Minor fixes and cosmetics * Fixed bugs and improved contrib/cifar10 example * Updated docs * Fixes issue #543 (#572) * Fixes issue #543 Previous CM implementation suffered from the problem if target contains non-contiguous indices. New implementation is almost taken from torchvision's https://github.com/pytorch/vision/blob/master/references/segmentation/utils.py#L75-L117 This commit also removes the case of targets as (batchsize, num_categories, ...) where num_categories excludes background class. Confusion matrix computation is possible almost similarly for (batchsize, ...), but when target is all zero (0, ..., 0) = no classes (background class), then confusion matrix does not count any true/false predictions. * Update confusion_matrix.py * Update metrics.rst * Updated docs and set device as "cuda" in distributed instead of raising error * [WIP] Fix missing _is_reduced in precision/recall with tests * Updated other tests * Added mlflow logger (#558) * Added mlflow logger without tests * Added mlflow tests, updated mlflow logger code and other tests * Updated docs and added mlflow in travis * Added tests for mlflow OptimizerParamsHandler - additionally added OptimizerParamsHandler for plx with tests * Update to PyTorch v1.2.0 (#580) * Update .travis.yml * Update .travis.yml * Fixed tests and improved travis * Fix SSL problem of failing travis (#581) * Update .travis.yml * Update .travis.yml * Fixed tests and improved travis * Fixes SSL problem to download model weights * Fixed travis for deploy and nightly * Fixes #583 (#584) * Fixes docs build warnings (#585) * Return removable handle from Engine.add_event_handler(). (#588) * Add tests for event removable handle. Add feature tests for engine.add_event_handler returning removable event handles. * Return RemovableEventHandle from Engine.add_event_handler. * Fixup removable event handle test in python 2.7. Explicitly trigger gc, allowing cycle detection between engine and state, in removable handle weakref test. Python 2.7 cycle detection appears to be less aggressive than python 3+. * Add removable event handler docs. Add autodoc configuration for RemovableEventHandler, expand "concepts" documentation with event remove example following event add example. * Update concepts.rst * Updated travis and renamed tbptt test gpu -> cuda
vfdev-5
added a commit
that referenced
this pull request
Oct 24, 2019
* [WIP] Added cifar10 distributed example * [WIP] Metric with all reduce decorator and tests * [WIP] Added tests for accumulation metric * [WIP] Updated with reinit_is_reduced * [WIP] Distrib adaptation for other metrics * [WIP] Warnings for EpochMetric and Precision/Recall when distrib * Updated metrics and tests to run on distributed configuration - Test on 2 GPUS single node - Added cmd in .travis.yml to indicate how to test locally - Updated travis to run tests in 4 processes * Minor fixes and cosmetics * Fixed bugs and improved contrib/cifar10 example * Updated docs * Update metrics.rst * Updated docs and set device as "cuda" in distributed instead of raising error * [WIP] Fix missing _is_reduced in precision/recall with tests * Updated other tests * Updated travis and renamed tbptt test gpu -> cuda * Distrib (#573) * [WIP] Added cifar10 distributed example * [WIP] Metric with all reduce decorator and tests * [WIP] Added tests for accumulation metric * [WIP] Updated with reinit_is_reduced * [WIP] Distrib adaptation for other metrics * [WIP] Warnings for EpochMetric and Precision/Recall when distrib * Updated metrics and tests to run on distributed configuration - Test on 2 GPUS single node - Added cmd in .travis.yml to indicate how to test locally - Updated travis to run tests in 4 processes * Minor fixes and cosmetics * Fixed bugs and improved contrib/cifar10 example * Updated docs * Fixes issue #543 (#572) * Fixes issue #543 Previous CM implementation suffered from the problem if target contains non-contiguous indices. New implementation is almost taken from torchvision's https://github.com/pytorch/vision/blob/master/references/segmentation/utils.py#L75-L117 This commit also removes the case of targets as (batchsize, num_categories, ...) where num_categories excludes background class. Confusion matrix computation is possible almost similarly for (batchsize, ...), but when target is all zero (0, ..., 0) = no classes (background class), then confusion matrix does not count any true/false predictions. * Update confusion_matrix.py * Update metrics.rst * Updated docs and set device as "cuda" in distributed instead of raising error * [WIP] Fix missing _is_reduced in precision/recall with tests * Updated other tests * Added mlflow logger (#558) * Added mlflow logger without tests * Added mlflow tests, updated mlflow logger code and other tests * Updated docs and added mlflow in travis * Added tests for mlflow OptimizerParamsHandler - additionally added OptimizerParamsHandler for plx with tests * Update to PyTorch v1.2.0 (#580) * Update .travis.yml * Update .travis.yml * Fixed tests and improved travis * Fix SSL problem of failing travis (#581) * Update .travis.yml * Update .travis.yml * Fixed tests and improved travis * Fixes SSL problem to download model weights * Fixed travis for deploy and nightly * Fixes #583 (#584) * Fixes docs build warnings (#585) * Return removable handle from Engine.add_event_handler(). (#588) * Add tests for event removable handle. Add feature tests for engine.add_event_handler returning removable event handles. * Return RemovableEventHandle from Engine.add_event_handler. * Fixup removable event handle test in python 2.7. Explicitly trigger gc, allowing cycle detection between engine and state, in removable handle weakref test. Python 2.7 cycle detection appears to be less aggressive than python 3+. * Add removable event handler docs. Add autodoc configuration for RemovableEventHandler, expand "concepts" documentation with event remove example following event add example. * Update concepts.rst * Updated travis and renamed tbptt test gpu -> cuda * Compute IoU, Precision, Recall based on CM on CPU * Fixes incomplete merge with 1856c8e * Update distrib branch and CIFAR10 example (#647) * Added tests with gloo, minor updates and fixes * Added single/multi node tests with gloo and [WIP] with nccl * Added tests for multi-node nccl, improved examples/contrib/cifar10 example * Experiments: 1n1gpu, 1n2gpus, 2n2gpus * Fix flake8 * Fixes #645 (#646) - fix CI and improve create_lr_scheduler_with_warmup * Fix tests for python 2.7 * Finalized Cifar10 example (#649) * Added gcp tb logger image and updated README * Added gcp ai platform scripts to run trainings * Improved docs and readmes
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
PR fixes #543 and probably #554
Description:
Previous CM implementation suffered from the problem if target contains non-contiguous indices.
New implementation is almost taken from torchvision's https://github.com/pytorch/vision/blob/master/references/segmentation/utils.py#L75-L117
In addition, this implementation is more robust when trained in fp16. Previous implementation used torch.matmul which is patched by nvidia/apex confusion matrix goes easily to inf/nan.
!!! This commit also removes the case of targets as (batchsize, num_categories, ...) where num_categories excludes background class.
Confusion matrix computation is possible almost similarly for (batchsize, ...), but when target is all zero (0, ..., 0) = no classes (background class), then confusion matrix does not count any true/false predictions.
Check list:
Target indices ouside of
[0, num_classes]are ignored as a mask(y >= 0) & (y < num_classes)is applied. This can be generalized with a custom methodisinmethod :