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wow-such-code and others added 22 commits November 2, 2020 17:21
make imgag dropbox raise exception if unknown data types arrive
Add new line at end of file
* Feature/checksum maintenance (#50)

This PR introduces a maintenance task that will refresh the path info db and update missing checksums

* Feature/checksum maintenance (#52)

This PR favors the ChecksumCalculationTask over the path info db refresh task and has been confirmed to work in a openbis 18.06.2 test instance.

* Update CL

* Add new line at end of file
Add new line at end of file

* convert experiment id to string for v3 objects

* Convert experiment id to string for v3 objects (#55)

* Rename data folder for pooled data (#54)

* adapt changelog

Co-authored-by: wow-such-code <andreas.friedrich@uni-tuebingen.de>
* convert experiment id to string for v3 objects

* adapt changelog

* fetch samples by id without using search service
* retry sample tracking update for incoming data and log failure

Co-authored-by: Sven F <sven.fillinger@qbic.uni-tuebingen.de>
Release 1.6.0
* add readme

* add regex description

* include attachment readme in main readme

Co-authored-by: Sven F <sven.fillinger@qbic.uni-tuebingen.de>
* add readme for conversion and registration of mass spec data

Co-authored-by: jnnfr <jennifer.boedker@qbic.uni-tuebingen.de>

* move readme to the top folder

* fix formatting

Co-authored-by: Sven F <sven.fillinger@qbic.uni-tuebingen.de>
Co-authored-by: jnnfr <jennifer.boedker@qbic.uni-tuebingen.de>
* add HLA typing description to README

* remove faulty description from script

Co-authored-by: wow-such-code <andreas.friedrich@uni-tuebingen.de>
* Adds completed version of Omero imaging data registration script:
* General metadata is stored in openBIS (imaging experiments and samples)
* Data and additional metadata key-value-pairs are stored in OMERO
* Add readme for Omero etl script
* Added some comments to code
* Minor code cleanup

Co-authored-by: Sven F <sven.fillinger@qbic.uni-tuebingen.de>
Co-authored-by: luiskuhn <38211686+luiskuhn@users.noreply.github.com>
Co-authored-by: luiskuhn <luis.kuhn@gmail.com>
Co-authored-by: Tobias Koch <KochTobi@users.noreply.github.com>
@luiskuhn luiskuhn requested a review from wow-such-code May 11, 2021 10:20
@luiskuhn luiskuhn closed this May 11, 2021
@luiskuhn luiskuhn reopened this May 11, 2021
@luiskuhn
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I would like to sync these branches to add validation to the omero etl script without conflicts

@luiskuhn
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looks good

@wow-such-code wow-such-code merged commit 57995de into development May 11, 2021
@wow-such-code wow-such-code deleted the resolve_conflicts branch May 11, 2021 12:01
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5 participants