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v0.5.0

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@telatin telatin released this 06 May 14:11
v0.5.0
766fea2

Kraut provides several subcommands for different tasks.

  • single-report: Filter or reformat a single Kraken report.
  • make-table: Build a configurable multi-sample abundance table.
  • ma-export: Export reports for MicrobiomeAnalyst as counts.csv, taxonomy.csv, metadata.csv, and tree.nwk.
  • alpha: Calculate alpha diversity metrics.
  • beta: Calculate beta diversity distance matrices and ordination plots.
  • dendrogram: Plot hierarchical clustering dendrograms.
  • plot-single: Plot composition for one sample.
  • plot-multi: Plot composition across multiple samples.
  • split-combine-table: Split a KrakenTools combined table into ALL/LVL tables.
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