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Convert verification scripts to tests and replace prints with logging #8

@razinkele

Description

@razinkele

Files: verify_ecospace.py, verify_biodata_deps.py, and other ad-hoc print scripts & test helpers.

Description: There are many print()-based verification scripts and test helpers. Convert them into proper unit/integration tests (using pytest) or replace prints with the logging facility so output is structured and usable in CI logs.

What to do:

  • Identify verification scripts and where they are used.
  • For reproducible checks, convert to pytest tests that assert behavior rather than print results.
  • For utility/diagnostic scripts, add consistent logging usage using app/logger.py.

Acceptance criteria:

  • No new print() usage in repository for verification/test outputs (unless intentionally for CLI script). Tests replace a subset of scripts where appropriate.

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