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Database of citation relationships

Database of citation relationships, sourced from CrossRef, web scraping, etc.

Scripts

php crossref-to-db.php takes DOI and gets citation data from CrossRef

php pensoft-to-db.php takes local Pensoft JATS XML download, extracts citations and tries to enhance

php match-to-db.php does a SQL query to get a list of articles and tries to match them to the local database (and optionally to CrossRef)

PDF citation extraction

Extract references from PDF

php pdf-extract.php

Wikidata

Match cited references to Wikidata items

php wikidata-match.php 

Generate quick statements for Wikidata

php wikidata-cites-quickstatments.php

Citation identifiers

http://opencitations.net/oci

Wikidata example: http://opencitations.net/oci/01027931310-01022252312

Sources

CrossRef, Daisy, etc.

cites.php calls external services to get data and dump to SQL.

BioOne

Need to fetch HTMl for reference page, then parse.

JStage

Has citation data in Google Scholar tags.

Akademiai

Extract from web page.

Taylor and Francis

Need to fetch HTMl for reference page, then parse.

Matching citations to DOIs and other GUIDs

Citations may not be linked to DOIs, so we may need to fix this.

match.php matches citations to DOIs in microcitations.publications table (i. E., does SQL query

match-to-db.php uses micro citation web service to match to any GUIDs in microcitations.publications table

Example refs

Darwininitium – a new fully pseudosigmurethrous orthurethran genus from Nepal (Gastropoda, Pulmonata, Cerastidae) has very few linked references, but many can be linked.

Example taxa

Oryzomys couesi has a very detailed Wikipedia page, how much of this can be captured in Wikidata?

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