meeting_notes

Meeting Notes

Meeting - 2017-10-20 - 9:30am

General

• We had an introductory meeting to discuss the scope of the project, our team workflow, and to generate some initial issues.
• We agreed on the general workflow as described in workflow notes
• The HackSeq organizers have asked us to try to write up a small manuscript de
• We reviewed some of the initial data sets, and some of the possible stories to start working on. These were broken down like so:

1. Import

• We agreed that converting output from disparate tools to a common format would be useful, and would make for easily separable issues
• For each input tool, we want to write a simple parser that converts the output to BEDPE format
• I have created issues for each of the initial input tools

2. Annotation

• We agreed that it would be good/useful to be able to annotate predicted fusion events (from the BEDPE files generated above), against existing fusion databases
• To that end, I have created a set of issues along the lines of 'Document Data Source', to check whether these data sources have available APIs
• I have also stubbed out an issue to research additional data sources, as necessary