Compiler is breaking neon files

[RiKap]

Bug Report

Subject	Details
Rector version	Rector v0.7.16 (same on v0.7.17 which contains master #3226 )
Installed as	prefixed Rector PHAR

Minimal PHP Code Causing Issue

https://getrector.org/demo/3b20af0d-9c51-43d5-b081-c2180fefd052#result

It is valid on this link, but only because it use normal version, not prefixed.
When you run rector on same code, but prefixed phar version, it will do this.

    public function run()
    {
-		return preg_replace('!/\*.*?\*/!s', '', $content);
+		return \_HumbugBox60a0d18192e0\Nette\Utils\Strings::replace($content, '!/\*.*?\*/!s', '');
    }

As you can see, it replace preg_replace with prefixed class, not the valid one.

It is because of changed nette-utils-code-quality.yaml.
It looks like this:

# @see https://www.tomasvotruba.cz/blog/2018/07/30/hidden-gems-of-php-packages-nette-utils/
services:
    Rector\Core\Rector\Function_\FunctionToStaticCallRector:
        $functionToStaticCall:
            # filesystem
            file_get_contents: ['_HumbugBox60a0d18192e0\Nette\Utils\FileSystem', 'read']
            unlink: ['_HumbugBox60a0d18192e0\Nette\Utils\FileSystem', 'delete']
            rmdir: ['_HumbugBox60a0d18192e0\Nette\Utils\FileSystem', 'delete']

    # strings
    Rector\Nette\Rector\NotIdentical\StrposToStringsContainsRector: null
    Rector\Nette\Rector\FuncCall\SubstrStrlenFunctionToNetteUtilsStringsRector: null
    Rector\Nette\Rector\Identical\StartsWithFunctionToNetteUtilsStringsRector: null
    Rector\Nette\Rector\Identical\EndsWithFunctionToNetteUtilsStringsRector: null
    Rector\Nette\Rector\FuncCall\PregFunctionToNetteUtilsStringsRector: null
    Rector\Nette\Rector\FuncCall\JsonDecodeEncodeToNetteUtilsJsonDecodeEncodeRector: null
    Rector\Nette\Rector\FuncCall\FilePutContentsToFileSystemWriteRector: null

Expected Behaviour

    public function run()
    {
-		return preg_replace('!/\*.*?\*/!s', '', $content);
+		return \Nette\Utils\Strings::replace($content, '!/\*.*?\*/!s', '');
    }

[TomasVotruba]

Great report!

The config/set path needs to be exclued in https://github.com/rectorphp/rector/blob/master/compiler/build/scoper.inc.php

[RiKap]

@TomasVotruba This should fix it. #3232